Variant report

Variant	rs1737038
Chromosome Location	chr6:29736691-29736692
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:29725785..29727435-chr6:29736523..29738044,2	MCF-7	breast:

Extended variants
information (count: 170 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:152)

rs_ID	r²[population]
rs1362068	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1362069	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1362070	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1419641	0.88[EUR][1000 genomes]
rs1610634	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1610635	0.90[EUR][1000 genomes]
rs1610636	0.90[EUR][1000 genomes]
rs1610637	0.90[EUR][1000 genomes]
rs1610640	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1610641	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1610642	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1610643	0.86[EUR][1000 genomes]
rs1610644	0.86[EUR][1000 genomes]
rs1610645	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1610646	0.83[EUR][1000 genomes]
rs1610647	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1610648	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1610650	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1610653	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1610713	0.83[EUR][1000 genomes]
rs1610717	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1610718	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1610720	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1610722	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1610723	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1610724	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1610726	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1611196	0.83[EUR][1000 genomes]
rs1611199	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1611200	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1611204	0.89[ASN][1000 genomes]
rs1611206	0.87[ASN][1000 genomes]
rs1611207	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1611211	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1611213	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1611217	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1611218	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1611219	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1611220	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1611221	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1611222	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1611223	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1611227	0.89[ASN][1000 genomes]
rs1611228	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1611229	0.87[EUR][1000 genomes]
rs1611230	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1611233	0.85[EUR][1000 genomes]
rs1611234	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1611241	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1611246	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1611247	0.87[ASN][1000 genomes]
rs1611248	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1611249	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1611252	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1611259	0.91[ASN][1000 genomes]
rs1611260	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1611265	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1611266	0.80[AFR][1000 genomes];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1611267	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1611270	0.90[EUR][1000 genomes]
rs1611271	0.90[EUR][1000 genomes]
rs1611275	0.88[EUR][1000 genomes]
rs1612392	0.90[EUR][1000 genomes]
rs1614309	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1615251	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1615962	0.88[EUR][1000 genomes]
rs1618670	0.98[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1630062	0.91[AFR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1632980	0.83[EUR][1000 genomes]
rs1632981	0.80[EUR][1000 genomes]
rs1632983	0.80[EUR][1000 genomes]
rs1633001	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1633003	0.82[ASN][1000 genomes]
rs1633009	0.86[EUR][1000 genomes]
rs1633010	0.96[AFR][1000 genomes];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1633011	0.86[EUR][1000 genomes]
rs1633014	0.98[AFR][1000 genomes];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1633015	0.86[EUR][1000 genomes]
rs1633016	0.98[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1633018	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1633019	0.98[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1633020	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1633022	0.87[EUR][1000 genomes]
rs1633023	0.87[EUR][1000 genomes]
rs1633024	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1633027	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1633028	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1633029	0.88[EUR][1000 genomes]
rs1633030	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1633031	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1633032	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1633033	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1633034	0.98[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1633035	0.98[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1633037	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1633041	0.90[EUR][1000 genomes]
rs1736991	0.81[AFR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1736999	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1737002	0.85[EUR][1000 genomes]
rs1737003	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1737004	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1737006	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1737009	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1737010	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1737011	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1737012	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1737013	0.86[EUR][1000 genomes]
rs1737014	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1737015	0.83[EUR][1000 genomes]
rs1737017	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1737018	0.89[ASN][1000 genomes]
rs1737019	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1737020	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1737021	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1737028	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1737029	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1737031	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1737032	0.90[EUR][1000 genomes]
rs1737035	0.90[EUR][1000 genomes]
rs1737036	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1737037	0.90[EUR][1000 genomes]
rs1737040	0.90[EUR][1000 genomes]
rs1737041	0.90[EUR][1000 genomes]
rs1737042	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1737044	0.90[EUR][1000 genomes]
rs1737045	0.90[EUR][1000 genomes]
rs1737047	0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1737048	0.90[EUR][1000 genomes]
rs1737049	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1737050	0.89[EUR][1000 genomes]
rs1737051	0.89[EUR][1000 genomes]
rs1737054	0.88[EUR][1000 genomes]
rs1737056	0.89[EUR][1000 genomes]
rs1737057	0.88[EUR][1000 genomes]
rs1737059	0.88[EUR][1000 genomes]
rs2394171	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2394685	0.88[ASN][1000 genomes]
rs2735042	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2735044	0.88[EUR][1000 genomes]
rs2844837	0.81[EUR][1000 genomes]
rs2844839	0.88[ASN][1000 genomes]
rs2844840	0.91[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2893981	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3129185	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs885938	0.90[EUR][1000 genomes]
rs885939	0.90[EUR][1000 genomes]
rs885940	0.90[EUR][1000 genomes]
rs909722	0.81[AFR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9258288	0.88[EUR][1000 genomes]
rs9258289	0.88[EUR][1000 genomes]
rs9258291	0.89[EUR][1000 genomes]
rs9258374	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:18 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv20940	chr6:29653954-29923410	Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
2	nsv428475	chr6:29659525-29763392	Strong transcription Weak transcription Flanking Active TSS Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
3	nsv428139	chr6:29659525-29892317	Bivalent Enhancer Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
4	nsv427749	chr6:29659525-29975144	Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
5	nsv508397	chr6:29663132-29761448	Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Weak transcription Strong transcription Transcr. at gene 5' and 3' Enhancers Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
6	esv1794141	chr6:29670915-29765814	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
7	nsv10809	chr6:29692573-29794119	Flanking Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
8	nsv883532	chr6:29703262-29814963	Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
9	esv3441842	chr6:29715749-29942950	Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Strong transcription Bivalent/Poised TSS Active TSS Genic enhancers Bivalent Enhancer Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
10	nsv883535	chr6:29725321-29741338	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
11	esv11180	chr6:29729381-29800066	Enhancers Bivalent Enhancer Weak transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
12	esv3422641	chr6:29732573-29737571	Weak transcription Enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
13	esv3332677	chr6:29733187-29961463	Flanking Active TSS Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
14	esv3423001	chr6:29733216-29878601	Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
15	esv3475027	chr6:29733297-29922699	Bivalent Enhancer Weak transcription Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
16	esv3475028	chr6:29733297-29922699	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
17	esv3420260	chr6:29734457-29835593	Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Flanking Active TSS Bivalent Enhancer Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
18	esv3330285	chr6:29736281-29881328	Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs1737038	HIST1H2AM	cis	parietal	SCAN
rs1737038	BTN3A2	cis	parietal	SCAN
rs1737038	ZNF192	cis	cerebellum	SCAN
rs1737038	HIST1H3J	cis	parietal	SCAN

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:29728600-29737200	Weak transcription	Lung	lung
2	chr6:29731400-29739000	Weak transcription	Spleen	Spleen
3	chr6:29731600-29738800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr6:29733600-29755800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr6:29736600-29738200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr6:29736600-29739000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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