Variant report

Variant	rs1610645
Chromosome Location	chr6:29759996-29759997
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:25)
CpG islands
(count:244)
Chromatin interactive
region (count:2)
LncRNA
region (count:2)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:25 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr6:29759817-29760493	GM12892	blood:	n/a	n/a
2	POLR2A	chr6:29759931-29760154	GM12891	blood:	n/a	n/a
3	SIN3A	chr6:29759784-29760664	H1-hESC	embryonic stem cell:	n/a	n/a
4	POLR2A	chr6:29759959-29760234	GM12878	blood:	n/a	n/a
5	POLR2A	chr6:29759913-29760638	MCF10A-Er-Src	breast:	n/a	n/a
6	POLR2A	chr6:29759960-29760733	PFSK-1	brain:	n/a	n/a
7	EGR1	chr6:29759991-29760498	MCF-7	breast:	n/a	n/a
8	YY1	chr6:29759795-29760300	H1-hESC	embryonic stem cell:	n/a	n/a
9	HEY1	chr6:29759967-29760083	HepG2	liver:	n/a	n/a
10	YY1	chr6:29759847-29760189	GM12892	blood:	n/a	n/a
11	RFX5	chr6:29759777-29760075	HepG2	liver:	n/a	n/a
12	POLR2A	chr6:29759838-29760597	MCF-7	breast:	n/a	n/a
13	RFX5	chr6:29759672-29760045	Hela-S3	cervix:	n/a	n/a
14	YY1	chr6:29759667-29760273	H1-hESC	embryonic stem cell:	n/a	n/a
15	POLR2A	chr6:29759807-29760922	PFSK-1	brain:	n/a	n/a
16	POLR2A	chr6:29759882-29760804	GM19099	blood:	n/a	n/a
17	POLR2A	chr6:29759845-29760667	GM18505	blood:	n/a	n/a
18	RFX5	chr6:29759845-29760037	H1-hESC	embryonic stem cell:	n/a	n/a
19	BACH1	chr6:29759860-29760583	H1-hESC	embryonic stem cell:	n/a	n/a
20	POLR2A	chr6:29759952-29760135	GM12891	blood:	n/a	n/a
21	CTCF	chr6:29759921-29760630	MCF-7	breast:	n/a	n/a
22	POLR2A	chr6:29759842-29760555	MCF-7	breast:	n/a	n/a
23	POLR2A	chr6:29759738-29760665	MCF10A-Er-Src	breast:	n/a	n/a
24	POLR2A	chr6:29759980-29760159	HepG2	liver:	n/a	n/a
25	HDAC2	chr6:29759932-29760664	MCF-7	breast:	n/a	n/a

(count:244 , 50 per page) page: 1 2 3 4 5

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr6:29759947-29759997	NHDF-neo	bronchial:	n/a
2	chr6:29759949-29759999	BJ	skin:	n/a
3	chr6:29759972-29760022	BE2_C	brain:	n/a
4	chr6:29759947-29759997	ECC-1	luminal epithelium:	n/a
5	chr6:29759972-29760022	Jurkat	blood:	n/a
6	chr6:29759972-29760022	SKMC	muscle:	n/a
7	chr6:29759955-29760005	Jurkat	blood:	n/a
8	chr6:29759949-29759999	GM12891	blood:	n/a
9	chr6:29759972-29760022	AG09319	gingival:	n/a
10	chr6:29759955-29760005	AG04449	skin:	fetal
11	chr6:29759949-29759999	HMEC	breast:	n/a
12	chr6:29759955-29760005	BJ	skin:	n/a
13	chr6:29759947-29759997	AG04450	lung:	fetal
14	chr6:29759949-29759999	MCF10A-Er-Src	breast:	n/a
15	chr6:29759947-29759997	NB4	blood:	n/a
16	chr6:29759949-29759999	A549	lung:	n/a
17	chr6:29759949-29759999	NB4	blood:	n/a
18	chr6:29759947-29759997	IMR90	lung:	fetal
19	chr6:29759955-29760005	AoSMC	blood vessel:	n/a
20	chr6:29759949-29759999	Hepatocyte	liver:	n/a
21	chr6:29759947-29759997	K562	blood:	n/a
22	chr6:29759972-29760022	AG09309	skin:	n/a
23	chr6:29759947-29759997	SKMC	muscle:	n/a
24	chr6:29759955-29760005	PANC-1	pancreas:	n/a
25	chr6:29759947-29759997	NT2-D1	testis:	n/a
26	chr6:29759972-29760022	HNPCEpiC	eye:	n/a
27	chr6:29759972-29760022	HRE	kidney:	n/a
28	chr6:29759972-29760022	HL-60	blood:	n/a
29	chr6:29759949-29759999	AG10803	skin:	n/a
30	chr6:29759949-29759999	HepG2	liver:	n/a
31	chr6:29759949-29759999	Jurkat	blood:	n/a
32	chr6:29759972-29760022	GM12891	blood:	n/a
33	chr6:29759972-29760022	NH-A	brain:	n/a
34	chr6:29759972-29760022	IMR90	lung:	fetal
35	chr6:29759972-29760022	HRPEpiC	eye:	n/a
36	chr6:29759972-29760022	CMK	blood:	n/a
37	chr6:29759949-29759999	HUVEC	blood vessel:	n/a
38	chr6:29759949-29759999	T-47D	breast:	n/a
39	chr6:29759949-29759999	LNCaP	prostate:	n/a
40	chr6:29759955-29760005	AG04450	lung:	fetal
41	chr6:29759947-29759997	HCM	heart:	n/a
42	chr6:29759949-29759999	ovcar-3	ovarian:	n/a
43	chr6:29759949-29759999	SKMC	muscle:	n/a
44	chr6:29759947-29759997	HRCEpiC	kidney:	n/a
45	chr6:29759949-29759999	HCPEpiC	choroid plexus:	n/a
46	chr6:29759947-29759997	LNCaP	prostate:	n/a
47	chr6:29759947-29759997	GM12891	blood:	n/a
48	chr6:29759949-29759999	HNPCEpiC	eye:	n/a
49	chr6:29759955-29760005	HAEpiC	amniotic membrane:	n/a
50	chr6:29759947-29759997	HRPEpiC	eye:	n/a

(count:2 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:29755459..29758755-chr6:29758827..29760410,3	MCF-7	breast:
2	chr6:29759731..29760249-chr6:31324546..31325250,2	HCT-116	colon:

(count:2 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ZFP57-14	chr6:29758808-29760850	NONHSAT108552
2	lnc-ZFP57-14	chr6:29759530-29760527	NONHSAT108553

No data

Variant related genes	Relation type
HLA-V	TF binding region
HLA-V	CpG island
ENSG00000181126	Chromatin interaction
ENSG00000234745	Chromatin interaction

Extended variants
information (count: 154 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:131)

rs_ID	r²[population]
rs1362068	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1362069	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1362070	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1610634	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1610640	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1610641	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1610642	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1610646	0.81[EUR][1000 genomes]
rs1610647	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1610648	0.81[EUR][1000 genomes]
rs1610650	0.80[EUR][1000 genomes]
rs1610651	0.81[AFR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1610653	0.81[EUR][1000 genomes]
rs1610656	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1610669	0.85[EUR][1000 genomes]
rs1610670	0.86[EUR][1000 genomes]
rs1610701	0.85[EUR][1000 genomes]
rs1610703	0.85[EUR][1000 genomes]
rs1610712	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1610713	0.81[EUR][1000 genomes]
rs1610716	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1610717	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1610718	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1610720	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1610722	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1610723	0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1610724	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1610725	0.86[EUR][1000 genomes]
rs1610726	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1611178	0.91[EUR][1000 genomes]
rs1611193	0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1611194	0.91[EUR][1000 genomes]
rs1611196	0.81[EUR][1000 genomes]
rs1611199	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1611200	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1611204	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1611206	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1611207	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1611211	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1611213	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1611217	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1611218	0.98[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1611219	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1611220	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1611221	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1611222	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1611223	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1611227	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1611228	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1611230	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1611234	0.84[ASN][1000 genomes]
rs1611241	0.86[ASN][1000 genomes]
rs1611246	0.88[ASN][1000 genomes]
rs1611247	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1611248	0.85[ASN][1000 genomes]
rs1611249	0.84[ASN][1000 genomes]
rs1611252	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1611259	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1611260	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1611265	0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1611266	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1611267	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1614309	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1615251	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1615839	0.83[AFR][1000 genomes];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1618670	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1630062	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1632981	0.81[EUR][1000 genomes]
rs1632982	0.88[EUR][1000 genomes]
rs1632983	0.81[EUR][1000 genomes]
rs1632995	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1632996	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1633003	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1633010	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1633014	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1633016	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1633018	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1633019	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1633020	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1633024	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1633027	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1633028	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1633030	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1633031	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1633032	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1633033	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1633034	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1633035	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1633037	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1736976	0.88[EUR][1000 genomes]
rs1736977	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1736984	0.84[AFR][1000 genomes];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1736991	0.81[EUR][1000 genomes]
rs1736998	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1736999	0.82[ASN][1000 genomes]
rs1737003	0.97[AFR][1000 genomes];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1737004	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1737006	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1737009	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1737010	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1737011	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1737012	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1737014	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1737015	0.81[EUR][1000 genomes]
rs1737017	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1737018	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1737019	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1737020	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1737021	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1737028	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1737029	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1737031	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1737036	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1737038	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1737042	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1737047	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1737049	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2394171	0.86[ASN][1000 genomes]
rs2394685	0.80[ASN][1000 genomes]
rs2508055	0.81[AMR][1000 genomes]
rs2517921	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2735042	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2844839	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2844840	0.83[ASN][1000 genomes]
rs2893981	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3129185	0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs739780	0.85[EUR][1000 genomes]
rs885937	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs909720	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs909722	0.82[EUR][1000 genomes]
rs9258374	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:23 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv20940	chr6:29653954-29923410	Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
2	nsv428475	chr6:29659525-29763392	Strong transcription Weak transcription Flanking Active TSS Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
3	nsv428139	chr6:29659525-29892317	Bivalent Enhancer Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
4	nsv427749	chr6:29659525-29975144	Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
5	nsv508397	chr6:29663132-29761448	Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Weak transcription Strong transcription Transcr. at gene 5' and 3' Enhancers Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
6	esv1794141	chr6:29670915-29765814	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
7	nsv10809	chr6:29692573-29794119	Flanking Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
8	nsv883532	chr6:29703262-29814963	Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
9	esv3441842	chr6:29715749-29942950	Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Strong transcription Bivalent/Poised TSS Active TSS Genic enhancers Bivalent Enhancer Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
10	esv11180	chr6:29729381-29800066	Enhancers Bivalent Enhancer Weak transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
11	esv3332677	chr6:29733187-29961463	Flanking Active TSS Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
12	esv3423001	chr6:29733216-29878601	Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
13	esv3475027	chr6:29733297-29922699	Bivalent Enhancer Weak transcription Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
14	esv3475028	chr6:29733297-29922699	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
15	esv3420260	chr6:29734457-29835593	Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Flanking Active TSS Bivalent Enhancer Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
16	esv3330285	chr6:29736281-29881328	Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
17	nsv883536	chr6:29746023-29760819	Transcr. at gene 5' and 3' Flanking Active TSS Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
18	nsv883537	chr6:29746023-29767611	Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Enhancers Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
19	nsv883538	chr6:29748206-29760819	Bivalent Enhancer Active TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
20	nsv883539	chr6:29748206-29780529	Bivalent/Poised TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
21	esv3396224	chr6:29754243-29888093	Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
22	nsv965702	chr6:29758408-29798943	Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
23	esv3430372	chr6:29759523-29974277	Genic enhancers Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:100 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:29758400-29760000	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr6:29758600-29760600	Active TSS	Placenta Amnion	Placenta Amnion
3	chr6:29759000-29760600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr6:29759000-29760800	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr6:29759000-29761000	Active TSS	Pancreatic Islets	Pancreatic Islet
6	chr6:29759200-29760000	Bivalent/Poised TSS	Stomach Smooth Muscle	stomach
7	chr6:29759200-29760800	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr6:29759200-29760800	Active TSS	Brain Hippocampus Middle	brain
9	chr6:29759200-29760800	Active TSS	NHEK	skin
10	chr6:29759200-29761000	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
11	chr6:29759200-29761000	Active TSS	Brain Angular Gyrus	brain
12	chr6:29759200-29761200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr6:29759400-29760000	Active TSS	HMEC	breast
14	chr6:29759400-29760400	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr6:29759400-29760800	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr6:29759400-29760800	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr6:29759400-29760800	Active TSS	Brain Anterior Caudate	brain
18	chr6:29759400-29760800	Active TSS	Rectal Mucosa Donor 31	rectum
19	chr6:29759400-29761000	Active TSS	H9 Cell Line	embryonic stem cell
20	chr6:29759400-29761000	Active TSS	NHDF-Ad	bronchial
21	chr6:29759600-29760000	Flanking Bivalent TSS/Enh	H1 Cell Line	embryonic stem cell
22	chr6:29759600-29760000	Bivalent/Poised TSS	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr6:29759600-29760000	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
24	chr6:29759600-29760000	Enhancers	Small Intestine	intestine
25	chr6:29759600-29760200	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
26	chr6:29759600-29760200	Flanking Bivalent TSS/Enh	Colonic Mucosa	Colon
27	chr6:29759600-29760200	Flanking Active TSS	Spleen	Spleen
28	chr6:29759600-29760400	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
29	chr6:29759600-29760400	Flanking Active TSS	Duodenum Mucosa	Duodenum
30	chr6:29759600-29760400	Active TSS	Hela-S3	cervix
31	chr6:29759600-29760600	Flanking Bivalent TSS/Enh	Primary T cells fromperipheralblood	blood
32	chr6:29759600-29760600	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
33	chr6:29759600-29760600	Flanking Active TSS	Adipose Nuclei	Adipose
34	chr6:29759600-29760600	Flanking Active TSS	Liver	Liver
35	chr6:29759600-29760600	Active TSS	Lung	lung
36	chr6:29759600-29760600	Flanking Bivalent TSS/Enh	Skeletal Muscle Female	skeletal muscle
37	chr6:29759600-29760800	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
38	chr6:29759600-29760800	Active TSS	Breast Myoepithelial Primary Cells	Breast
39	chr6:29759600-29760800	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
40	chr6:29759600-29760800	Active TSS	Brain Cingulate Gyrus	brain
41	chr6:29759600-29760800	Active TSS	Brain Substantia Nigra	brain
42	chr6:29759600-29760800	Active TSS	Esophagus	oesophagus
43	chr6:29759600-29760800	Active TSS	Gastric	stomach
44	chr6:29759600-29760800	Active TSS	Rectal Smooth Muscle	rectum
45	chr6:29759600-29760800	Bivalent/Poised TSS	HepG2	liver
46	chr6:29759600-29761000	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
47	chr6:29759600-29761000	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
48	chr6:29759600-29761000	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
49	chr6:29759600-29761000	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
50	chr6:29759600-29761000	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links