Variant report

Variant	rs1610646
Chromosome Location	chr6:29760819-29760820
allele	A/C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:5)
CpG islands
(count:305)
Chromatin interactive
region (count:0)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:5 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr6:29760425-29761859	GM19193	blood:	n/a	n/a
2	IRF1	chr6:29760719-29760887	K562	blood:	n/a	n/a
3	MYC	chr6:29760712-29760871	MCF-7	breast:	n/a	n/a
4	POLR2A	chr6:29759807-29760922	PFSK-1	brain:	n/a	n/a
5	POLR2A	chr6:29760813-29760844	MCF-7	breast:	n/a	n/a

(count:305 , 50 per page) page: 1 2 3 4 5 6 7

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr6:29760805-29760855	HAEpiC	amniotic membrane:	n/a
2	chr6:29760784-29760834	RPTEC	kidney:	n/a
3	chr6:29760773-29760823	IMR90	lung:	fetal
4	chr6:29760773-29760823	HUVEC	blood vessel:	n/a
5	chr6:29760784-29760834	PrEC	prostate:	n/a
6	chr6:29760782-29760832	GM12878	blood:	n/a
7	chr6:29760784-29760834	PFSK-1	brain:	n/a
8	chr6:29760784-29760834	NB4	blood:	n/a
9	chr6:29760769-29760819	PANC-1	pancreas:	n/a
10	chr6:29760769-29760819	PrEC	prostate:	n/a
11	chr6:29760769-29760819	HMEC	breast:	n/a
12	chr6:29760782-29760832	GM19239	blood:	n/a
13	chr6:29760805-29760855	HIPEpiC	eye:	n/a
14	chr6:29760784-29760834	BE2_C	brain:	n/a
15	chr6:29760784-29760834	AG04450	lung:	fetal
16	chr6:29760805-29760855	AG09319	gingival:	n/a
17	chr6:29760782-29760832	LNCaP	prostate:	n/a
18	chr6:29760773-29760823	MCF10A-Er-Src	breast:	n/a
19	chr6:29760769-29760819	HPAEpiC	pulmonary alveolar:	n/a
20	chr6:29760784-29760834	HAEpiC	amniotic membrane:	n/a
21	chr6:29760773-29760823	Jurkat	blood:	n/a
22	chr6:29760782-29760832	HCT-116	colon:	n/a
23	chr6:29760769-29760819	AoSMC	blood vessel:	n/a
24	chr6:29760769-29760819	SK-N-SH	brain:	n/a
25	chr6:29760782-29760832	A549	lung:	n/a
26	chr6:29760784-29760834	ovcar-3	ovarian:	n/a
27	chr6:29760784-29760834	BJ	skin:	n/a
28	chr6:29760784-29760834	HCPEpiC	choroid plexus:	n/a
29	chr6:29760805-29760855	AG09309	skin:	n/a
30	chr6:29760805-29760855	Hepatocyte	liver:	n/a
31	chr6:29760782-29760832	ovcar-3	ovarian:	n/a
32	chr6:29760782-29760832	AG09309	skin:	n/a
33	chr6:29760805-29760855	ECC-1	luminal epithelium:	n/a
34	chr6:29760782-29760832	SK-N-MC	brain:	n/a
35	chr6:29760805-29760855	GM06990	blood:	n/a
36	chr6:29760773-29760823	Hepatocyte	liver:	n/a
37	chr6:29760784-29760834	ProgFib	skin:	n/a
38	chr6:29760782-29760832	BE2_C	brain:	n/a
39	chr6:29760769-29760819	GM12892	blood:	n/a
40	chr6:29760784-29760834	AG09319	gingival:	n/a
41	chr6:29760784-29760834	K562	blood:	n/a
42	chr6:29760782-29760832	NHBE	bronchial:	n/a
43	chr6:29760769-29760819	NHDF-neo	bronchial:	n/a
44	chr6:29760769-29760819	T-47D	breast:	n/a
45	chr6:29760784-29760834	ECC-1	luminal epithelium:	n/a
46	chr6:29760769-29760819	HRPEpiC	eye:	n/a
47	chr6:29760784-29760834	GM12878	blood:	n/a
48	chr6:29760769-29760819	GM12891	blood:	n/a
49	chr6:29760782-29760832	NHDF-neo	bronchial:	n/a
50	chr6:29760769-29760819	GM06990	blood:	n/a

No data

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ZFP57-14	chr6:29758808-29760850	NONHSAT108552

No data

Variant related genes	Relation type
HCG4	TF binding region
HCG4	CpG island

Extended variants
information (count: 173 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:150)

rs_ID	r²[population]
rs1362069	0.80[EUR][1000 genomes]
rs1419641	0.91[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1610635	0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1610636	0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1610637	0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1610640	0.81[EUR][1000 genomes]
rs1610643	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1610644	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1610645	0.81[EUR][1000 genomes]
rs1610647	0.81[EUR][1000 genomes]
rs1610654	0.85[EUR][1000 genomes]
rs1610655	0.84[EUR][1000 genomes]
rs1610658	0.85[EUR][1000 genomes]
rs1610659	0.85[EUR][1000 genomes]
rs1610661	0.85[EUR][1000 genomes]
rs1610662	0.84[EUR][1000 genomes]
rs1610665	0.85[EUR][1000 genomes]
rs1610697	0.85[EUR][1000 genomes]
rs1610698	0.85[EUR][1000 genomes]
rs1610709	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1610710	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1610711	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1610714	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1610715	0.85[EUR][1000 genomes]
rs1610718	0.81[EUR][1000 genomes]
rs1610725	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1610726	0.83[EUR][1000 genomes]
rs1611172	0.83[EUR][1000 genomes]
rs1611175	0.82[EUR][1000 genomes]
rs1611191	0.85[EUR][1000 genomes]
rs1611195	0.85[EUR][1000 genomes]
rs1611196	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1611207	0.81[EUR][1000 genomes]
rs1611211	0.81[EUR][1000 genomes]
rs1611219	0.81[EUR][1000 genomes]
rs1611220	0.81[EUR][1000 genomes]
rs1611221	0.81[EUR][1000 genomes]
rs1611223	0.81[EUR][1000 genomes]
rs1611228	0.83[EUR][1000 genomes]
rs1611229	0.92[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1611230	0.83[EUR][1000 genomes]
rs1611233	0.91[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1611252	0.84[EUR][1000 genomes]
rs1611260	0.82[EUR][1000 genomes]
rs1611267	0.85[EUR][1000 genomes]
rs1611270	0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1611271	0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1611275	0.90[AFR][1000 genomes];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1612392	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1614309	0.84[EUR][1000 genomes]
rs1615962	0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1618670	0.87[EUR][1000 genomes]
rs1624302	0.84[EUR][1000 genomes]
rs1629068	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1630969	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1632973	0.85[EUR][1000 genomes]
rs1632976	0.84[EUR][1000 genomes]
rs1632979	0.84[EUR][1000 genomes]
rs1632987	0.84[EUR][1000 genomes]
rs1632988	0.82[EUR][1000 genomes]
rs1632997	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1633000	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1633002	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1633004	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1633006	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1633007	0.80[AFR][1000 genomes];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1633009	0.93[AFR][1000 genomes];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1633010	0.90[EUR][1000 genomes]
rs1633011	0.93[AFR][1000 genomes];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1633014	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1633015	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1633016	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1633018	0.83[EUR][1000 genomes]
rs1633019	0.86[EUR][1000 genomes]
rs1633020	0.84[EUR][1000 genomes]
rs1633022	0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1633023	0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1633028	0.84[EUR][1000 genomes]
rs1633029	0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1633030	0.84[EUR][1000 genomes]
rs1633032	0.83[EUR][1000 genomes]
rs1633033	0.84[EUR][1000 genomes]
rs1633034	0.87[EUR][1000 genomes]
rs1633035	0.87[EUR][1000 genomes]
rs1633041	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1736963	0.84[EUR][1000 genomes]
rs1736964	0.85[EUR][1000 genomes]
rs1736966	0.85[EUR][1000 genomes]
rs1736967	0.85[EUR][1000 genomes]
rs1736968	0.85[EUR][1000 genomes]
rs1736969	0.85[EUR][1000 genomes]
rs1736971	0.85[EUR][1000 genomes]
rs1736972	0.84[EUR][1000 genomes]
rs1736973	0.84[EUR][1000 genomes]
rs1736974	0.84[EUR][1000 genomes]
rs1736975	0.84[EUR][1000 genomes]
rs1736983	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1736985	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1736986	0.80[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1736994	0.80[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs1737000	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1737002	0.91[AFR][1000 genomes];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1737009	0.81[EUR][1000 genomes]
rs1737010	0.81[EUR][1000 genomes]
rs1737011	0.81[EUR][1000 genomes]
rs1737012	0.81[EUR][1000 genomes]
rs1737013	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1737014	0.81[EUR][1000 genomes]
rs1737015	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1737019	0.80[EUR][1000 genomes]
rs1737020	0.80[EUR][1000 genomes]
rs1737029	0.83[EUR][1000 genomes]
rs1737031	0.83[EUR][1000 genomes]
rs1737032	0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1737035	0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1737036	0.83[EUR][1000 genomes]
rs1737037	0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1737038	0.83[EUR][1000 genomes]
rs1737040	0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1737041	0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1737042	0.83[EUR][1000 genomes]
rs1737044	0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1737045	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1737047	0.82[EUR][1000 genomes]
rs1737048	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1737049	0.83[EUR][1000 genomes]
rs1737050	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1737051	0.91[EUR][1000 genomes]
rs1737054	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1737056	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1737057	0.80[AFR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1737059	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2248870	0.84[EUR][1000 genomes]
rs2248871	0.84[EUR][1000 genomes]
rs2517919	0.82[EUR][1000 genomes]
rs2517920	0.82[EUR][1000 genomes]
rs2523410	0.82[EUR][1000 genomes]
rs2735029	0.85[EUR][1000 genomes]
rs2735042	0.83[EUR][1000 genomes]
rs2735044	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2844837	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs28514417	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2893981	0.83[EUR][1000 genomes]
rs885938	0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs885939	0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs885940	0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs909722	0.80[EUR][1000 genomes]
rs9258288	0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9258289	0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9258448	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:23 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv20940	chr6:29653954-29923410	Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
2	nsv428475	chr6:29659525-29763392	Strong transcription Weak transcription Flanking Active TSS Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
3	nsv428139	chr6:29659525-29892317	Bivalent Enhancer Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
4	nsv427749	chr6:29659525-29975144	Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
5	nsv508397	chr6:29663132-29761448	Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Weak transcription Strong transcription Transcr. at gene 5' and 3' Enhancers Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
6	esv1794141	chr6:29670915-29765814	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
7	nsv10809	chr6:29692573-29794119	Flanking Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
8	nsv883532	chr6:29703262-29814963	Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
9	esv3441842	chr6:29715749-29942950	Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Strong transcription Bivalent/Poised TSS Active TSS Genic enhancers Bivalent Enhancer Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
10	esv11180	chr6:29729381-29800066	Enhancers Bivalent Enhancer Weak transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
11	esv3332677	chr6:29733187-29961463	Flanking Active TSS Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
12	esv3423001	chr6:29733216-29878601	Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
13	esv3475027	chr6:29733297-29922699	Bivalent Enhancer Weak transcription Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
14	esv3475028	chr6:29733297-29922699	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
15	esv3420260	chr6:29734457-29835593	Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Flanking Active TSS Bivalent Enhancer Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
16	esv3330285	chr6:29736281-29881328	Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
17	nsv883536	chr6:29746023-29760819	Transcr. at gene 5' and 3' Flanking Active TSS Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
18	nsv883537	chr6:29746023-29767611	Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Enhancers Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
19	nsv883538	chr6:29748206-29760819	Bivalent Enhancer Active TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
20	nsv883539	chr6:29748206-29780529	Bivalent/Poised TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
21	esv3396224	chr6:29754243-29888093	Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
22	nsv965702	chr6:29758408-29798943	Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
23	esv3430372	chr6:29759523-29974277	Genic enhancers Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:103 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:29759000-29761000	Active TSS	Pancreatic Islets	Pancreatic Islet
2	chr6:29759200-29761000	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
3	chr6:29759200-29761000	Active TSS	Brain Angular Gyrus	brain
4	chr6:29759200-29761200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr6:29759400-29761000	Active TSS	H9 Cell Line	embryonic stem cell
6	chr6:29759400-29761000	Active TSS	NHDF-Ad	bronchial
7	chr6:29759600-29761000	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
8	chr6:29759600-29761000	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
9	chr6:29759600-29761000	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
10	chr6:29759600-29761000	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
11	chr6:29759600-29761000	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
12	chr6:29759600-29761000	Active TSS	Right Atrium	heart
13	chr6:29759600-29761000	Bivalent/Poised TSS	Osteobl	bone
14	chr6:29759600-29761200	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
15	chr6:29759800-29761000	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
16	chr6:29759800-29761000	Bivalent/Poised TSS	Primary T cells from cord blood	blood
17	chr6:29759800-29761000	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
18	chr6:29759800-29761000	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr6:29759800-29761000	Active TSS	Aorta	Aorta
20	chr6:29759800-29761000	Bivalent/Poised TSS	Duodenum Smooth Muscle	Duodenum
21	chr6:29759800-29761000	Bivalent/Poised TSS	HSMM	muscle
22	chr6:29759800-29761000	Flanking Bivalent TSS/Enh	Monocytes-CD14+_RO01746	blood
23	chr6:29759800-29761200	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
24	chr6:29760000-29761000	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
25	chr6:29760000-29761000	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr6:29760000-29761000	Bivalent Enhancer	Fetal Brain Male	brain
27	chr6:29760000-29761000	Bivalent Enhancer	Fetal Heart	heart
28	chr6:29760000-29761000	Flanking Active TSS	HMEC	breast
29	chr6:29760200-29761000	Flanking Active TSS	Primary B cells from peripheral blood	blood
30	chr6:29760200-29761000	Bivalent/Poised TSS	Colonic Mucosa	Colon
31	chr6:29760200-29761000	Bivalent/Poised TSS	Psoas Muscle	Psoas
32	chr6:29760200-29761000	Bivalent/Poised TSS	Sigmoid Colon	Sigmoid Colon
33	chr6:29760200-29761000	Active TSS	A549	lung
34	chr6:29760200-29761000	Bivalent/Poised TSS	NHLF	lung
35	chr6:29760400-29761000	Bivalent Enhancer	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
36	chr6:29760400-29761000	Bivalent/Poised TSS	Colon Smooth Muscle	Colon
37	chr6:29760400-29764400	Weak transcription	Hela-S3	cervix
38	chr6:29760600-29761000	Bivalent/Poised TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
39	chr6:29760600-29761000	Bivalent/Poised TSS	Primary neutrophils fromperipheralblood	blood
40	chr6:29760600-29761000	Bivalent/Poised TSS	Muscle Satellite Cultured Cells	--
41	chr6:29760600-29761000	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
42	chr6:29760600-29761000	Bivalent Enhancer	Fetal Muscle Leg	muscle
43	chr6:29760600-29761000	Bivalent Enhancer	Fetal Stomach	stomach
44	chr6:29760600-29761000	Enhancers	Placenta Amnion	Placenta Amnion
45	chr6:29760600-29761000	Bivalent Enhancer	Small Intestine	intestine
46	chr6:29760600-29761200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
47	chr6:29760600-29761200	Bivalent Enhancer	Fetal Muscle Trunk	muscle
48	chr6:29760600-29761200	Enhancers	Lung	lung
49	chr6:29760800-29761000	Bivalent Enhancer	H1 Derived Mesenchymal Stem Cells	ES cell derived
50	chr6:29760800-29761000	Flanking Bivalent TSS/Enh	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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