Variant report

Variant	rs1610640
Chromosome Location	chr6:29758525-29758526
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	JUND	chr6:29758234-29759061	HCT-116	colon:	n/a	chr6:29758603-29758611 chr6:29758601-29758613 chr6:29758604-29758615
2	SP1	chr6:29758248-29759060	HCT-116	colon:	n/a	n/a
3	STAT3	chr6:29758501-29758687	MCF10A-Er-Src	breast:	n/a	n/a
4	FOSL1	chr6:29758318-29758980	HCT-116	colon:	n/a	chr6:29758603-29758611 chr6:29758601-29758613 chr6:29758604-29758615
5	POLR2A	chr6:29758493-29758820	Hela-S3	cervix:	n/a	n/a
6	RCOR1	chr6:29758451-29758663	Hela-S3	cervix:	n/a	n/a
7	FOSL2	chr6:29758452-29758779	HepG2	liver:	n/a	chr6:29758603-29758611 chr6:29758601-29758613 chr6:29758604-29758615
8	EP300	chr6:29758315-29758906	ECC-1	luminal epithelium:	n/a	chr6:29758593-29758600
9	EP300	chr6:29758382-29758720	HepG2	liver:	n/a	chr6:29758593-29758600
10	FOSL1	chr6:29758249-29759360	HCT-116	colon:	n/a	chr6:29758603-29758611 chr6:29758601-29758613 chr6:29758604-29758615
11	POLR2A	chr6:29758360-29758847	HCT-116	colon:	n/a	n/a
12	TEAD4	chr6:29758423-29758862	ECC-1	luminal epithelium:	n/a	chr6:29758571-29758580
13	FOS	chr6:29758430-29758782	MCF10A-Er-Src	breast:	n/a	chr6:29758603-29758611 chr6:29758601-29758613 chr6:29758604-29758615
14	FOS	chr6:29758430-29759272	MCF10A-Er-Src	breast:	n/a	chr6:29758603-29758611 chr6:29758601-29758613 chr6:29758604-29758615
15	MAX	chr6:29758239-29758907	HCT-116	colon:	n/a	n/a
16	TEAD4	chr6:29758388-29758848	HCT-116	colon:	n/a	chr6:29758571-29758580
17	SP1	chr6:29758289-29759050	HCT-116	colon:	n/a	n/a
18	FOS	chr6:29758431-29759264	MCF10A-Er-Src	breast:	n/a	chr6:29758603-29758611 chr6:29758601-29758613 chr6:29758604-29758615
19	TEAD4	chr6:29758353-29758841	ECC-1	luminal epithelium:	n/a	chr6:29758571-29758580
20	POLR2A	chr6:29758495-29758758	Hela-S3	cervix:	n/a	n/a
21	USF2	chr6:29758398-29758685	Hela-S3	cervix:	n/a	n/a
22	YY1	chr6:29758443-29758749	HCT-116	colon:	n/a	n/a
23	FOS	chr6:29758418-29758753	MCF10A-Er-Src	breast:	n/a	chr6:29758603-29758611 chr6:29758601-29758613 chr6:29758604-29758615
24	MYC	chr6:29758453-29758673	MCF10A-Er-Src	breast:	n/a	n/a
25	STAT3	chr6:29758474-29758773	MCF10A-Er-Src	breast:	n/a	n/a
26	TCF12	chr6:29758350-29758829	ECC-1	luminal epithelium:	n/a	n/a
27	MYC	chr6:29758445-29758666	MCF10A-Er-Src	breast:	n/a	n/a
28	JUND	chr6:29758286-29758923	HCT-116	colon:	n/a	chr6:29758603-29758611 chr6:29758601-29758613 chr6:29758604-29758615
29	TEAD4	chr6:29758297-29758873	HCT-116	colon:	n/a	chr6:29758571-29758580
30	MAX	chr6:29758462-29758657	Hela-S3	cervix:	n/a	n/a
31	POLR2A	chr6:29758421-29758789	HCT-116	colon:	n/a	n/a
32	ARID3A	chr6:29758519-29758625	HepG2	liver:	n/a	n/a
33	STAT3	chr6:29758473-29758782	MCF10A-Er-Src	breast:	n/a	n/a
34	CEBPB	chr6:29758432-29758726	Hela-S3	cervix:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:29755459..29758755-chr6:29758827..29760410,3	MCF-7	breast:

Variant related genes	Relation type
HLA-V	TF binding region
ENSG00000181126	Chromatin interaction

Extended variants
information (count: 153 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:131)

rs_ID	r²[population]
rs1362068	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1362069	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1362070	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1610634	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1610641	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1610642	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1610645	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1610646	0.81[EUR][1000 genomes]
rs1610647	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1610648	0.81[EUR][1000 genomes]
rs1610650	0.80[EUR][1000 genomes]
rs1610651	0.81[AFR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1610653	0.81[EUR][1000 genomes]
rs1610656	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1610669	0.85[EUR][1000 genomes]
rs1610670	0.86[EUR][1000 genomes]
rs1610701	0.85[EUR][1000 genomes]
rs1610703	0.85[EUR][1000 genomes]
rs1610712	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1610713	0.81[EUR][1000 genomes]
rs1610716	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1610717	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1610718	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1610720	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1610722	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1610723	0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1610724	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1610725	0.86[EUR][1000 genomes]
rs1610726	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1611178	0.91[EUR][1000 genomes]
rs1611193	0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1611194	0.91[EUR][1000 genomes]
rs1611196	0.81[EUR][1000 genomes]
rs1611199	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1611200	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1611204	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1611206	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1611207	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1611211	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1611213	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1611217	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1611218	0.98[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1611219	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1611220	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1611221	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1611222	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1611223	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1611227	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1611228	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1611230	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1611234	0.84[ASN][1000 genomes]
rs1611241	0.86[ASN][1000 genomes]
rs1611246	0.88[ASN][1000 genomes]
rs1611247	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1611248	0.85[ASN][1000 genomes]
rs1611249	0.84[ASN][1000 genomes]
rs1611252	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1611259	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1611260	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1611265	0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1611266	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1611267	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1614309	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1615251	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1615839	0.83[AFR][1000 genomes];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1618670	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1630062	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1632981	0.81[EUR][1000 genomes]
rs1632982	0.88[EUR][1000 genomes]
rs1632983	0.81[EUR][1000 genomes]
rs1632995	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1632996	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1633003	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1633010	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1633014	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1633016	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1633018	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1633019	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1633020	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1633024	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1633027	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1633028	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1633030	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1633031	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1633032	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1633033	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1633034	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1633035	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1633037	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1736976	0.88[EUR][1000 genomes]
rs1736977	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1736984	0.84[AFR][1000 genomes];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1736991	0.81[EUR][1000 genomes]
rs1736998	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1736999	0.82[ASN][1000 genomes]
rs1737003	0.97[AFR][1000 genomes];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1737004	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1737006	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1737009	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1737010	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1737011	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1737012	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1737014	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1737015	0.81[EUR][1000 genomes]
rs1737017	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1737018	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1737019	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1737020	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1737021	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1737028	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1737029	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1737031	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1737036	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1737038	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1737042	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1737047	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1737049	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2394171	0.86[ASN][1000 genomes]
rs2394685	0.80[ASN][1000 genomes]
rs2508055	0.81[AMR][1000 genomes]
rs2517921	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2735042	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2844839	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2844840	0.83[ASN][1000 genomes]
rs2893981	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3129185	0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs739780	0.85[EUR][1000 genomes]
rs885937	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs909720	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs909722	0.82[EUR][1000 genomes]
rs9258374	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:22 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv20940	chr6:29653954-29923410	Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
2	nsv428475	chr6:29659525-29763392	Strong transcription Weak transcription Flanking Active TSS Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
3	nsv428139	chr6:29659525-29892317	Bivalent Enhancer Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
4	nsv427749	chr6:29659525-29975144	Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
5	nsv508397	chr6:29663132-29761448	Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Weak transcription Strong transcription Transcr. at gene 5' and 3' Enhancers Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
6	esv1794141	chr6:29670915-29765814	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
7	nsv10809	chr6:29692573-29794119	Flanking Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
8	nsv883532	chr6:29703262-29814963	Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
9	esv3441842	chr6:29715749-29942950	Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Strong transcription Bivalent/Poised TSS Active TSS Genic enhancers Bivalent Enhancer Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
10	esv11180	chr6:29729381-29800066	Enhancers Bivalent Enhancer Weak transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
11	esv3332677	chr6:29733187-29961463	Flanking Active TSS Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
12	esv3423001	chr6:29733216-29878601	Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
13	esv3475027	chr6:29733297-29922699	Bivalent Enhancer Weak transcription Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
14	esv3475028	chr6:29733297-29922699	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
15	esv3420260	chr6:29734457-29835593	Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Flanking Active TSS Bivalent Enhancer Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
16	esv3330285	chr6:29736281-29881328	Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
17	nsv883536	chr6:29746023-29760819	Transcr. at gene 5' and 3' Flanking Active TSS Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
18	nsv883537	chr6:29746023-29767611	Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Enhancers Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
19	nsv883538	chr6:29748206-29760819	Bivalent Enhancer Active TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
20	nsv883539	chr6:29748206-29780529	Bivalent/Poised TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
21	esv3396224	chr6:29754243-29888093	Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
22	nsv965702	chr6:29758408-29798943	Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs1610640	HIST1H2AM	cis	parietal	SCAN
rs1610640	BTN3A2	cis	parietal	SCAN
rs1610640	HIST1H3J	cis	parietal	SCAN
rs1610640	ZNF192	cis	cerebellum	SCAN

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:29756000-29758600	Weak transcription	Pancreas	Pancrea
2	chr6:29757000-29758600	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr6:29757200-29758600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr6:29757400-29759000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr6:29757800-29758800	Enhancers	Hela-S3	cervix
6	chr6:29758000-29759000	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr6:29758200-29758600	Enhancers	NHEK	skin
8	chr6:29758400-29759000	Flanking Active TSS	HMEC	breast
9	chr6:29758400-29759400	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr6:29758400-29760000	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin

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