Variant report

Variant	rs1610642
Chromosome Location	chr6:29759078-29759079
allele	A/C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:5)
CpG islands
(count:61)
Chromatin interactive
region (count:1)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:5 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAZ	chr6:29759043-29759196	HepG2	liver:	n/a	n/a
2	FOSL1	chr6:29758249-29759360	HCT-116	colon:	n/a	chr6:29758603-29758611 chr6:29758601-29758613 chr6:29758604-29758615
3	FOS	chr6:29758430-29759272	MCF10A-Er-Src	breast:	n/a	chr6:29758603-29758611 chr6:29758601-29758613 chr6:29758604-29758615
4	CEBPB	chr6:29758960-29759205	Hela-S3	cervix:	n/a	n/a
5	FOS	chr6:29758431-29759264	MCF10A-Er-Src	breast:	n/a	chr6:29758603-29758611 chr6:29758601-29758613 chr6:29758604-29758615

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr6:29759078-29759128	HRE	kidney:	n/a
2	chr6:29759078-29759128	NT2-D1	testis:	n/a
3	chr6:29759078-29759128	Jurkat	blood:	n/a
4	chr6:29759078-29759128	HMEC	breast:	n/a
5	chr6:29759078-29759128	ECC-1	luminal epithelium:	n/a
6	chr6:29759078-29759128	HRPEpiC	eye:	n/a
7	chr6:29759078-29759128	HUVEC	blood vessel:	n/a
8	chr6:29759078-29759128	CMK	blood:	n/a
9	chr6:29759078-29759128	BJ	skin:	n/a
10	chr6:29759078-29759128	HIPEpiC	eye:	n/a
11	chr6:29759078-29759128	HCT-116	colon:	n/a
12	chr6:29759078-29759128	MCF10A-Er-Src	breast:	n/a
13	chr6:29759078-29759128	SKMC	muscle:	n/a
14	chr6:29759078-29759128	Hela-S3	cervix:	n/a
15	chr6:29759078-29759128	BE2_C	brain:	n/a
16	chr6:29759078-29759128	T-47D	breast:	n/a
17	chr6:29759078-29759128	PANC-1	pancreas:	n/a
18	chr6:29759078-29759128	HPAEpiC	pulmonary alveolar:	n/a
19	chr6:29759078-29759128	SAEC	small airway:	n/a
20	chr6:29759078-29759128	A549	lung:	n/a
21	chr6:29759078-29759128	HepG2	liver:	n/a
22	chr6:29759078-29759128	H1-hESC	embryonic stem cell:	embryo
23	chr6:29759078-29759128	GM12891	blood:	n/a
24	chr6:29759078-29759128	SK-N-SH	brain:	n/a
25	chr6:29759078-29759128	RPTEC	kidney:	n/a
26	chr6:29759078-29759128	SK-N-MC	brain:	n/a
27	chr6:29759078-29759128	MCF-7	breast:	n/a
28	chr6:29759078-29759128	GM06990	blood:	n/a
29	chr6:29759078-29759128	SK-N-SH_RA	brain:	n/a
30	chr6:29759078-29759128	HCF	heart:	n/a
31	chr6:29759078-29759128	GM12892	blood:	n/a
32	chr6:29759078-29759128	HCM	heart:	n/a
33	chr6:29759078-29759128	NH-A	brain:	n/a
34	chr6:29759078-29759128	LNCaP	prostate:	n/a
35	chr6:29759078-29759128	PFSK-1	brain:	n/a
36	chr6:29759078-29759128	NHDF-neo	bronchial:	n/a
37	chr6:29759078-29759128	GM19239	blood:	n/a
38	chr6:29759078-29759128	Caco-2	colon:	n/a
39	chr6:29759078-29759128	HEEpiC	esophagus:	n/a
40	chr6:29759078-29759128	NHBE	bronchial:	n/a
41	chr6:29759078-29759128	HRCEpiC	kidney:	n/a
42	chr6:29759078-29759128	ovcar-3	ovarian:	n/a
43	chr6:29759078-29759128	NB4	blood:	n/a
44	chr6:29759078-29759128	AG09319	gingival:	n/a
45	chr6:29759078-29759128	HNPCEpiC	eye:	n/a
46	chr6:29759078-29759128	HAEpiC	amniotic membrane:	n/a
47	chr6:29759078-29759128	U87	brain:	n/a
48	chr6:29759078-29759128	Hepatocyte	liver:	n/a
49	chr6:29759078-29759128	HEK293	kidney:	embryo
50	chr6:29759078-29759128	AoSMC	blood vessel:	n/a

(count:1 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:29755459..29758755-chr6:29758827..29760410,3	MCF-7	breast:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ZFP57-14	chr6:29758808-29760850	NONHSAT108552

No data

Variant related genes	Relation type
HLA-V	TF binding region
HLA-V	CpG island
ENSG00000181126	Chromatin interaction

Extended variants
information (count: 154 )
Associated
traits (count: 6 )

rSNPs within LD-proxies of this variant (count:132)

rs_ID	r²[population]
rs1362068	0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1362069	0.94[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1362070	0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1610634	0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1610640	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1610641	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1610643	0.80[EUR][1000 genomes]
rs1610644	0.80[EUR][1000 genomes]
rs1610645	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1610647	0.98[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1610651	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1610656	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1610664	0.82[EUR][1000 genomes]
rs1610669	0.82[EUR][1000 genomes]
rs1610670	0.83[EUR][1000 genomes]
rs1610699	0.81[EUR][1000 genomes]
rs1610701	0.82[EUR][1000 genomes]
rs1610703	0.82[EUR][1000 genomes]
rs1610712	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1610716	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1610717	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1610718	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1610720	0.98[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1610722	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1610723	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1610724	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1610725	0.89[EUR][1000 genomes]
rs1610726	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1611178	0.89[EUR][1000 genomes]
rs1611193	0.89[EUR][1000 genomes]
rs1611194	0.89[EUR][1000 genomes]
rs1611199	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1611200	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1611204	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1611206	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1611207	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1611211	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1611213	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1611217	0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1611218	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1611219	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1611220	0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1611221	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1611222	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1611223	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1611227	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1611228	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1611230	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1611234	0.85[ASN][1000 genomes]
rs1611241	0.87[ASN][1000 genomes]
rs1611246	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1611247	0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1611248	0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1611249	0.85[ASN][1000 genomes]
rs1611252	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1611259	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1611260	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1611265	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1611266	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1611267	0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1614309	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1615251	0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1615839	0.80[AFR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1618670	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1630062	0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1632977	0.81[EUR][1000 genomes]
rs1632978	0.81[EUR][1000 genomes]
rs1632980	0.81[EUR][1000 genomes]
rs1632982	0.85[EUR][1000 genomes]
rs1632995	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1632996	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1633001	0.81[EUR][1000 genomes]
rs1633003	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1633009	0.80[EUR][1000 genomes]
rs1633010	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1633011	0.80[EUR][1000 genomes]
rs1633014	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1633015	0.80[EUR][1000 genomes]
rs1633016	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1633018	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1633019	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1633020	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1633024	0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1633027	0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1633028	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1633030	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1633031	0.96[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1633032	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1633033	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1633034	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1633035	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1633037	0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1736970	0.82[EUR][1000 genomes]
rs1736976	0.85[EUR][1000 genomes]
rs1736977	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1736984	0.82[AFR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1736998	0.86[EUR][1000 genomes]
rs1736999	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1737003	0.99[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1737004	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1737006	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1737009	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1737010	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1737011	0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1737012	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1737013	0.80[EUR][1000 genomes]
rs1737014	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1737017	0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1737018	0.94[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1737019	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1737020	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1737021	0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1737028	0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1737029	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1737031	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1737036	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1737038	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1737042	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1737047	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1737049	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2394171	0.87[ASN][1000 genomes]
rs2394685	0.81[ASN][1000 genomes]
rs2517921	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2735042	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2844839	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2844840	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2893981	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3129185	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs739780	0.82[EUR][1000 genomes]
rs885937	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs909720	0.80[AFR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9258374	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:22 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv20940	chr6:29653954-29923410	Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
2	nsv428475	chr6:29659525-29763392	Strong transcription Weak transcription Flanking Active TSS Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
3	nsv428139	chr6:29659525-29892317	Bivalent Enhancer Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
4	nsv427749	chr6:29659525-29975144	Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
5	nsv508397	chr6:29663132-29761448	Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Weak transcription Strong transcription Transcr. at gene 5' and 3' Enhancers Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
6	esv1794141	chr6:29670915-29765814	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
7	nsv10809	chr6:29692573-29794119	Flanking Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
8	nsv883532	chr6:29703262-29814963	Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
9	esv3441842	chr6:29715749-29942950	Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Strong transcription Bivalent/Poised TSS Active TSS Genic enhancers Bivalent Enhancer Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
10	esv11180	chr6:29729381-29800066	Enhancers Bivalent Enhancer Weak transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
11	esv3332677	chr6:29733187-29961463	Flanking Active TSS Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
12	esv3423001	chr6:29733216-29878601	Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
13	esv3475027	chr6:29733297-29922699	Bivalent Enhancer Weak transcription Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
14	esv3475028	chr6:29733297-29922699	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
15	esv3420260	chr6:29734457-29835593	Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Flanking Active TSS Bivalent Enhancer Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
16	esv3330285	chr6:29736281-29881328	Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
17	nsv883536	chr6:29746023-29760819	Transcr. at gene 5' and 3' Flanking Active TSS Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
18	nsv883537	chr6:29746023-29767611	Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Enhancers Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
19	nsv883538	chr6:29748206-29760819	Bivalent Enhancer Active TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
20	nsv883539	chr6:29748206-29780529	Bivalent/Poised TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
21	esv3396224	chr6:29754243-29888093	Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
22	nsv965702	chr6:29758408-29798943	Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

mRNA abundance (count:6)

SNP	Gene	Cis/trans	Tissue	Source
rs1610642	ZNF192	cis	cerebellum	SCAN
rs1610642	HCG4	cis	normal skin	skin_eQTL
rs1610642	HIST1H3J	cis	parietal	SCAN
rs1610642	HIST1H2AM	cis	parietal	SCAN
rs1610642	HCG4	cis	uninvolved skin	skin_eQTL
rs1610642	BTN3A2	cis	parietal	SCAN

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:29758400-29759400	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr6:29758400-29760000	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr6:29758600-29759200	Flanking Active TSS	NHEK	skin
4	chr6:29758600-29759400	Enhancers	Esophagus	oesophagus
5	chr6:29758600-29759400	Enhancers	Pancreas	Pancrea
6	chr6:29758600-29759600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr6:29758600-29759800	Bivalent Enhancer	Stomach Mucosa	stomach
8	chr6:29758600-29760600	Active TSS	Placenta Amnion	Placenta Amnion
9	chr6:29758800-29759600	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
10	chr6:29758800-29759600	Enhancers	Duodenum Mucosa	Duodenum
11	chr6:29758800-29759600	Flanking Active TSS	Hela-S3	cervix
12	chr6:29759000-29759200	Flanking Bivalent TSS/Enh	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr6:29759000-29759200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr6:29759000-29759200	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
15	chr6:29759000-29759200	Enhancers	Brain Angular Gyrus	brain
16	chr6:29759000-29759200	Active TSS	HMEC	breast
17	chr6:29759000-29759400	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
18	chr6:29759000-29759400	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr6:29759000-29759400	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
20	chr6:29759000-29759400	Enhancers	Brain Cingulate Gyrus	brain
21	chr6:29759000-29759400	Enhancers	NHDF-Ad	bronchial
22	chr6:29759000-29759600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
23	chr6:29759000-29759600	Enhancers	Primary T helper cells fromperipheralblood	blood
24	chr6:29759000-29759600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
25	chr6:29759000-29759600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
26	chr6:29759000-29759600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
27	chr6:29759000-29759800	Active TSS	Brain Inferior Temporal Lobe	brain
28	chr6:29759000-29760600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr6:29759000-29760800	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr6:29759000-29761000	Active TSS	Pancreatic Islets	Pancreatic Islet

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