Variant report

Variant	rs1611949
Chromosome Location	chr18:29187166-29187167
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs1080093	1.00[CEU][hapmap];0.95[CHB][hapmap];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1080094	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1375446	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1473342	0.84[EUR][1000 genomes]
rs1616887	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1667237	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1667244	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1667254	0.84[EUR][1000 genomes]
rs1667255	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1667257	0.83[EUR][1000 genomes]
rs1667258	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1791197	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1791198	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1791199	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1791200	0.83[EUR][1000 genomes]
rs1791201	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1791228	0.82[ASN][1000 genomes]
rs1791229	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2704058	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs3764476	0.84[CEU][hapmap];0.80[EUR][1000 genomes]
rs3764479	0.84[CEU][hapmap]
rs3794884	0.84[CEU][hapmap];0.82[EUR][1000 genomes]
rs4799581	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4799583	0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6506932	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7235277	0.85[CEU][hapmap];0.82[EUR][1000 genomes]
rs723744	0.84[CEU][hapmap];0.82[CHB][hapmap];0.94[JPT][hapmap]
rs7243588	0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1066692	chr18:28856066-29190505	Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv543674	chr18:28856066-29190505	Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv833615	chr18:29008396-29192976	Strong transcription Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
4	nsv576636	chr18:29146822-29190174	Enhancers Genic enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv909519	chr18:29172865-29330214	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:29180800-29191000	Weak transcription	Fetal Intestine Large	intestine
2	chr18:29185400-29191800	Enhancers	HepG2	liver
3	chr18:29186400-29187200	Weak transcription	Liver	Liver
4	chr18:29186600-29187400	Weak transcription	Pancreas	Pancrea
5	chr18:29186600-29190200	Weak transcription	Fetal Intestine Small	intestine
6	chr18:29186800-29191200	Weak transcription	Pancreatic Islets	Pancreatic Islet

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