Variant report

Variant	rs3764476
Chromosome Location	chr18:29176460-29176461
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs1080093	0.84[CEU][hapmap];0.83[EUR][1000 genomes]
rs1080094	0.83[EUR][1000 genomes]
rs11081702	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11659687	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11662311	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11664321	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1375445	0.94[EUR][1000 genomes]
rs1473342	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1611949	0.80[EUR][1000 genomes]
rs1667239	0.94[EUR][1000 genomes]
rs1667244	0.84[CEU][hapmap];0.82[EUR][1000 genomes]
rs1667254	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1667257	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17660933	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17740847	0.91[ASN][1000 genomes]
rs1791200	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1791201	0.81[EUR][1000 genomes]
rs1791229	0.81[EUR][1000 genomes]
rs2034404	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2420813	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs3764478	0.89[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs3764479	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.98[TSI][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3794884	0.93[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];0.95[MEX][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4799579	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4799581	0.82[EUR][1000 genomes]
rs4799583	0.81[EUR][1000 genomes]
rs4799585	0.82[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs6506932	0.81[EUR][1000 genomes]
rs7232056	0.80[ASN][1000 genomes]
rs7235277	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs723744	1.00[CEU][hapmap];0.85[CHB][hapmap];0.88[CHD][hapmap];0.84[JPT][hapmap];0.98[TSI][hapmap];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7238749	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7243588	0.82[EUR][1000 genomes]
rs735329	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1066692	chr18:28856066-29190505	Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv543674	chr18:28856066-29190505	Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv833615	chr18:29008396-29192976	Strong transcription Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
4	nsv576636	chr18:29146822-29190174	Enhancers Genic enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv1066881	chr18:29149752-29180840	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
6	nsv909519	chr18:29172865-29330214	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:29171800-29178400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr18:29173400-29176800	Genic enhancers	HepG2	liver
3	chr18:29174400-29176600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr18:29174400-29176600	Enhancers	Placenta Amnion	Placenta Amnion
5	chr18:29174600-29177000	Genic enhancers	Fetal Intestine Small	intestine
6	chr18:29175000-29176800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr18:29175000-29178800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr18:29175200-29176600	Genic enhancers	Liver	Liver
9	chr18:29175600-29176600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr18:29175600-29176600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr18:29175600-29176600	Enhancers	NHDF-Ad	bronchial
12	chr18:29176000-29177000	Genic enhancers	Fetal Intestine Large	intestine
13	chr18:29176200-29176600	Enhancers	Pancreas	Pancrea
14	chr18:29176200-29176800	Genic enhancers	Pancreatic Islets	Pancreatic Islet
15	chr18:29176200-29177000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr18:29176400-29176600	Enhancers	HSMMtube	muscle

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