Variant report

Variant	rs17740847
Chromosome Location	chr18:29165918-29165919
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11081702	0.89[ASN][1000 genomes]
rs11659687	0.89[ASN][1000 genomes]
rs11662311	0.89[ASN][1000 genomes]
rs1473342	0.90[ASN][1000 genomes]
rs1667254	0.84[ASN][1000 genomes]
rs17660933	0.89[ASN][1000 genomes]
rs1791200	0.84[ASN][1000 genomes]
rs2034404	0.89[ASN][1000 genomes]
rs3764476	0.91[ASN][1000 genomes]
rs3764478	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3764479	0.93[ASN][1000 genomes]
rs3794884	0.91[ASN][1000 genomes]
rs4799579	0.89[ASN][1000 genomes]
rs4799585	0.83[ASN][1000 genomes]
rs7235277	0.91[ASN][1000 genomes]
rs723744	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1066692	chr18:28856066-29190505	Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv543674	chr18:28856066-29190505	Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv916545	chr18:28898800-29166364	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
4	nsv833615	chr18:29008396-29192976	Strong transcription Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
5	nsv576636	chr18:29146822-29190174	Enhancers Genic enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv1066881	chr18:29149752-29180840	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:29159400-29166400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr18:29159800-29166200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr18:29161000-29167000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr18:29161600-29166400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr18:29161800-29166400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr18:29162200-29166800	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr18:29163800-29167400	Weak transcription	Liver	Liver
8	chr18:29164400-29166000	Enhancers	Primary hematopoietic stem cells	blood
9	chr18:29165600-29166400	Enhancers	Primary hematopoietic stem cells short term culture	blood
10	chr18:29165600-29166800	Enhancers	HepG2	liver
11	chr18:29165600-29168000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr18:29165600-29168200	Enhancers	Fetal Intestine Small	intestine
13	chr18:29165800-29167800	Enhancers	Fetal Intestine Large	intestine

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links