Variant report

Variant	rs7235277
Chromosome Location	chr18:29176873-29176874
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs1080093	0.85[CEU][hapmap];0.82[EUR][1000 genomes]
rs1080094	0.82[EUR][1000 genomes]
rs11081702	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11659687	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11662311	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11664321	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1375445	0.92[EUR][1000 genomes]
rs1473342	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1611949	0.82[EUR][1000 genomes]
rs1667239	0.92[EUR][1000 genomes]
rs1667244	0.84[CEU][hapmap];0.80[EUR][1000 genomes]
rs1667254	0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1667257	0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17660933	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17740847	0.91[ASN][1000 genomes]
rs1791200	0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1791201	0.82[EUR][1000 genomes]
rs1791229	0.82[EUR][1000 genomes]
rs2034404	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2420813	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs3764476	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3764478	0.89[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs3764479	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3794884	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4799579	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4799581	0.81[EUR][1000 genomes]
rs4799583	0.82[EUR][1000 genomes]
rs4799585	0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs7232056	0.80[ASN][1000 genomes]
rs723744	1.00[CEU][hapmap];0.85[CHB][hapmap];0.84[JPT][hapmap];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7238749	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7243588	0.80[EUR][1000 genomes]
rs735329	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1066692	chr18:28856066-29190505	Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv543674	chr18:28856066-29190505	Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv833615	chr18:29008396-29192976	Strong transcription Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
4	nsv576636	chr18:29146822-29190174	Enhancers Genic enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv1066881	chr18:29149752-29180840	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
6	nsv909519	chr18:29172865-29330214	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:29171800-29178400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr18:29174600-29177000	Genic enhancers	Fetal Intestine Small	intestine
3	chr18:29175000-29178800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr18:29176000-29177000	Genic enhancers	Fetal Intestine Large	intestine
5	chr18:29176200-29177000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr18:29176600-29177400	Weak transcription	NHDF-Ad	bronchial
7	chr18:29176600-29180200	Strong transcription	Liver	Liver
8	chr18:29176800-29178200	Weak transcription	Pancreatic Islets	Pancreatic Islet
9	chr18:29176800-29180800	Strong transcription	HepG2	liver

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