Variant report

Variant	rs1667254
Chromosome Location	chr18:29186128-29186129
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs1080093	0.84[CEU][hapmap]
rs11081702	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11659687	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11662311	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11664321	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1375445	0.89[EUR][1000 genomes]
rs1473342	0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1611949	0.84[EUR][1000 genomes]
rs1667239	0.89[EUR][1000 genomes]
rs1667244	0.84[CEU][hapmap]
rs1667255	0.83[EUR][1000 genomes]
rs1667257	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1667258	0.83[EUR][1000 genomes]
rs17660933	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17740847	0.84[ASN][1000 genomes]
rs1791198	0.83[EUR][1000 genomes]
rs1791199	0.83[EUR][1000 genomes]
rs1791200	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1791201	0.84[EUR][1000 genomes]
rs1791229	0.84[EUR][1000 genomes]
rs2034404	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2420813	0.92[EUR][1000 genomes]
rs3764476	1.00[CEU][hapmap];0.85[CHD][hapmap];0.84[JPT][hapmap];1.00[TSI][hapmap];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3764478	0.83[CHD][hapmap];0.84[JPT][hapmap];0.87[ASN][1000 genomes]
rs3764479	1.00[CEU][hapmap];0.80[CHD][hapmap];0.84[JPT][hapmap];0.98[TSI][hapmap];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3794884	1.00[CEU][hapmap];0.83[CHD][hapmap];0.83[JPT][hapmap];1.00[TSI][hapmap];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4799579	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4799583	0.84[EUR][1000 genomes]
rs4799585	0.80[ASN][1000 genomes]
rs7235277	1.00[CEU][hapmap];0.84[JPT][hapmap];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs723744	1.00[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.98[TSI][hapmap];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7238749	0.85[EUR][1000 genomes]
rs735329	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1066692	chr18:28856066-29190505	Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv543674	chr18:28856066-29190505	Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv833615	chr18:29008396-29192976	Strong transcription Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
4	nsv576636	chr18:29146822-29190174	Enhancers Genic enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv909519	chr18:29172865-29330214	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:29180800-29191000	Weak transcription	Fetal Intestine Large	intestine
2	chr18:29185400-29191800	Enhancers	HepG2	liver
3	chr18:29185600-29186800	Enhancers	Pancreatic Islets	Pancreatic Islet
4	chr18:29186000-29186200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr18:29186000-29186400	Enhancers	Liver	Liver
6	chr18:29186000-29186600	Enhancers	Fetal Intestine Small	intestine

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