Variant report

Variant	rs1618635
Chromosome Location	chr3:99347096-99347097
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs1711553	0.87[AFR][1000 genomes]
rs1818483	0.84[AFR][1000 genomes]
rs485715	0.87[AFR][1000 genomes]
rs563041	0.89[AFR][1000 genomes]
rs595273	1.00[YRI][hapmap];0.88[AFR][1000 genomes]
rs640273	1.00[ASW][hapmap];0.89[LWK][hapmap];0.89[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs6440724	0.88[AFR][1000 genomes]
rs6803793	0.94[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs684701	1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.85[AMR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1618635	TDRD9	trans	lymphoblastoid	seeQTL

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:99341000-99352800	Weak transcription	Aorta	Aorta
2	chr3:99343000-99347200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr3:99346000-99347400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr3:99346400-99349200	Weak transcription	NHEK	skin
5	chr3:99346400-99352800	Weak transcription	NHLF	lung
6	chr3:99346400-99355800	Weak transcription	Hela-S3	cervix
7	chr3:99346600-99349200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr3:99346600-99349200	Weak transcription	HMEC	breast
9	chr3:99346600-99352800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr3:99347000-99347800	Enhancers	Muscle Satellite Cultured Cells	--
11	chr3:99347000-99352600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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