Variant report

Variant	rs684701
Chromosome Location	chr3:99369149-99369150
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs1618635	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs1711553	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1818483	1.00[EUR][1000 genomes]
rs485715	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs563041	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs595273	1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs640273	1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6440724	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6803793	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:99358000-99369400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr3:99360000-99370200	Weak transcription	Right Atrium	heart
3	chr3:99362800-99369200	Enhancers	NHLF	lung
4	chr3:99364000-99370200	Weak transcription	Ovary	ovary
5	chr3:99364400-99370000	Weak transcription	Duodenum Smooth Muscle	Duodenum
6	chr3:99365000-99370200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr3:99365000-99370200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr3:99365000-99370400	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr3:99365000-99371600	Enhancers	Breast Myoepithelial Primary Cells	Breast
10	chr3:99365200-99370200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr3:99365400-99369800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr3:99365600-99369600	Weak transcription	Stomach Smooth Muscle	stomach
13	chr3:99365600-99369800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr3:99366800-99372600	Genic enhancers	Osteobl	bone
15	chr3:99367200-99370200	Genic enhancers	HUVEC	blood vessel
16	chr3:99367200-99370400	Weak transcription	HUES6 Cell Line	embryonic stem cell
17	chr3:99367200-99370400	Weak transcription	Fetal Lung	lung
18	chr3:99367200-99372000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr3:99367200-99372000	Weak transcription	Aorta	Aorta
20	chr3:99367200-99372800	Weak transcription	Stomach Mucosa	stomach
21	chr3:99367200-99373400	Weak transcription	Esophagus	oesophagus
22	chr3:99367600-99369200	Enhancers	NHDF-Ad	bronchial
23	chr3:99367600-99370400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr3:99367800-99370000	Weak transcription	HMEC	breast
25	chr3:99367800-99370000	Strong transcription	HSMM	muscle
26	chr3:99367800-99370200	Genic enhancers	Muscle Satellite Cultured Cells	--
27	chr3:99367800-99370200	Weak transcription	Fetal Stomach	stomach
28	chr3:99367800-99370800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr3:99367800-99371800	Weak transcription	NHEK	skin
30	chr3:99367800-99372800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
31	chr3:99368000-99370200	Weak transcription	Rectal Mucosa Donor 31	rectum
32	chr3:99368000-99372000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
33	chr3:99368200-99369600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr3:99368200-99369800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr3:99368200-99369800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
36	chr3:99368200-99370000	Weak transcription	Adipose Nuclei	Adipose
37	chr3:99368200-99370200	Weak transcription	Rectal Smooth Muscle	rectum
38	chr3:99368200-99370200	Weak transcription	HSMMtube	muscle
39	chr3:99368600-99369400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
40	chr3:99368600-99369800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
41	chr3:99368800-99370000	Weak transcription	Colon Smooth Muscle	Colon
42	chr3:99369000-99369600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
43	chr3:99369000-99370200	Enhancers	NH-A	brain
44	chr3:99369000-99370600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
45	chr3:99369000-99373000	Genic enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links