Variant report
Variant | rs1818483 |
---|---|
Chromosome Location | chr3:99320364-99320365 |
allele | A/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:1 , 50 per page) page:
1
No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr3:99313372..99317178-chr3:99319758..99322601,3 | K562 | blood: |
No data |
No data |
No data |
Variant related genes | Relation type |
---|---|
ENSG00000244464 | Chromatin interaction |
rs_ID | r2[population] |
---|---|
rs1618635 | 0.84[AFR][1000 genomes] |
rs1711553 | 0.90[AFR][1000 genomes];1.00[EUR][1000 genomes] |
rs485715 | 0.88[AFR][1000 genomes];1.00[EUR][1000 genomes] |
rs563041 | 0.88[AFR][1000 genomes];1.00[EUR][1000 genomes] |
rs640273 | 1.00[EUR][1000 genomes] |
rs6440724 | 0.93[AFR][1000 genomes];1.00[EUR][1000 genomes] |
rs6764667 | 1.00[EUR][1000 genomes] |
rs6803793 | 0.89[AFR][1000 genomes];1.00[EUR][1000 genomes] |
rs684701 | 1.00[EUR][1000 genomes] |
rs72940133 | 1.00[EUR][1000 genomes] |
rs7652503 | 0.85[AFR][1000 genomes] |
rs9817743 | 0.85[AMR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv530026 | chr3:98837320-99340537 | ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
2 | esv3422853 | chr3:99208019-99342748 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
No data |