Variant report

Variant	rs7652503
Chromosome Location	chr3:99306682-99306683
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs13094190	0.84[ASN][1000 genomes]
rs1398735	0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1398736	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1513311	0.94[EUR][1000 genomes]
rs1814825	0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1818478	0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1818483	0.85[AFR][1000 genomes]
rs1967577	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs35161382	0.85[ASN][1000 genomes]
rs36119967	0.85[ASN][1000 genomes]
rs4928208	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs55690806	0.81[EUR][1000 genomes]
rs55805949	0.81[EUR][1000 genomes]
rs561391	0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs584343	0.94[EUR][1000 genomes]
rs58899534	0.81[EUR][1000 genomes]
rs62281787	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62281788	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62281820	0.84[EUR][1000 genomes]
rs62281821	0.81[EUR][1000 genomes]
rs62281822	0.81[EUR][1000 genomes]
rs62281824	0.81[EUR][1000 genomes]
rs62281827	0.81[EUR][1000 genomes]
rs6440728	0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6792073	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6792285	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6792442	0.80[EUR][1000 genomes]
rs687240	0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530026	chr3:98837320-99340537	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	esv3422853	chr3:99208019-99342748	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:99305200-99306800	Enhancers	Muscle Satellite Cultured Cells	--
2	chr3:99305400-99306800	Enhancers	HSMM	muscle
3	chr3:99306200-99307000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links