Variant report

Variant	rs62281827
Chromosome Location	chr3:99366459-99366460
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs1398735	0.86[EUR][1000 genomes]
rs1398736	0.84[EUR][1000 genomes]
rs1513311	0.86[EUR][1000 genomes]
rs1967577	0.84[EUR][1000 genomes]
rs55690806	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs55805949	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56047092	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs561391	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs584343	0.86[EUR][1000 genomes]
rs58899534	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62281787	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62281788	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62281820	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62281821	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62281822	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62281824	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6440728	0.86[EUR][1000 genomes]
rs6792073	0.84[EUR][1000 genomes]
rs6792285	0.84[EUR][1000 genomes]
rs6792442	0.83[AMR][1000 genomes]
rs687240	0.86[EUR][1000 genomes]
rs7652503	0.81[EUR][1000 genomes]

No data

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:99358000-99369400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr3:99360000-99370200	Weak transcription	Right Atrium	heart
3	chr3:99361200-99366600	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr3:99361600-99366600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr3:99362600-99367600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr3:99362600-99368800	Enhancers	Colon Smooth Muscle	Colon
7	chr3:99362800-99369200	Enhancers	NHLF	lung
8	chr3:99363200-99367400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr3:99363800-99366600	Enhancers	NH-A	brain
10	chr3:99363800-99367800	Enhancers	HMEC	breast
11	chr3:99363800-99369000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr3:99364000-99367000	Enhancers	NHDF-Ad	bronchial
13	chr3:99364000-99370200	Weak transcription	Ovary	ovary
14	chr3:99364400-99366800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr3:99364400-99367000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr3:99364400-99367400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr3:99364400-99370000	Weak transcription	Duodenum Smooth Muscle	Duodenum
18	chr3:99364800-99367000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr3:99364800-99368600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr3:99365000-99366600	Weak transcription	Brain Germinal Matrix	brain
21	chr3:99365000-99366600	Weak transcription	Rectal Mucosa Donor 31	rectum
22	chr3:99365000-99367000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr3:99365000-99367000	Weak transcription	Fetal Muscle Leg	muscle
24	chr3:99365000-99370200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
25	chr3:99365000-99370200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr3:99365000-99370400	Weak transcription	HUES64 Cell Line	embryonic stem cell
27	chr3:99365000-99371600	Enhancers	Breast Myoepithelial Primary Cells	Breast
28	chr3:99365200-99367000	Weak transcription	Aorta	Aorta
29	chr3:99365200-99368000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr3:99365200-99370200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
31	chr3:99365400-99366800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
32	chr3:99365400-99366800	Weak transcription	HSMMtube	muscle
33	chr3:99365400-99367000	Weak transcription	Stomach Mucosa	stomach
34	chr3:99365400-99367400	Weak transcription	Fetal Stomach	stomach
35	chr3:99365400-99369800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
36	chr3:99365600-99366600	Flanking Active TSS	HUVEC	blood vessel
37	chr3:99365600-99366800	Enhancers	Osteobl	bone
38	chr3:99365600-99369600	Weak transcription	Stomach Smooth Muscle	stomach
39	chr3:99365600-99369800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr3:99366000-99366600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
41	chr3:99366000-99366600	Enhancers	NHEK	skin
42	chr3:99366000-99368200	Enhancers	Rectal Smooth Muscle	rectum
43	chr3:99366200-99366600	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
44	chr3:99366200-99368200	Enhancers	Adipose Nuclei	Adipose
45	chr3:99366400-99367800	Transcr. at gene 5' and 3'	Muscle Satellite Cultured Cells	--
46	chr3:99366400-99367800	Genic enhancers	HSMM	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links