Variant report

Variant	rs584343
Chromosome Location	chr3:99341625-99341626
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-COL8A1-1	chr3:99340796-99342664	ENSG00000244464

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs1398735	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1398736	0.87[AFR][1000 genomes];0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1513311	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1814825	0.84[AFR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1818478	1.00[CEU][hapmap];0.93[CHB][hapmap];0.84[JPT][hapmap];0.84[AFR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1967577	0.87[AFR][1000 genomes];0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4928208	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs55690806	0.86[EUR][1000 genomes]
rs55805949	0.86[EUR][1000 genomes]
rs56047092	0.81[EUR][1000 genomes]
rs561391	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs58899534	0.86[EUR][1000 genomes]
rs62281787	0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62281788	0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62281820	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62281821	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62281822	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62281824	0.86[EUR][1000 genomes]
rs62281827	0.86[EUR][1000 genomes]
rs6440728	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6765840	0.83[JPT][hapmap]
rs6792073	0.87[AFR][1000 genomes];0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6792285	0.87[AFR][1000 genomes];0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6792442	0.80[EUR][1000 genomes]
rs687240	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7652503	0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3422853	chr3:99208019-99342748	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:99333600-99345800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr3:99339200-99343600	Weak transcription	Muscle Satellite Cultured Cells	--
3	chr3:99340400-99344200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr3:99340400-99346000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr3:99340600-99344000	Weak transcription	NHDF-Ad	bronchial
6	chr3:99340800-99343000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr3:99341000-99343400	Weak transcription	Hela-S3	cervix
8	chr3:99341000-99352800	Weak transcription	Aorta	Aorta
9	chr3:99341400-99344400	Weak transcription	HUVEC	blood vessel

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