Variant report

Variant	rs6792442
Chromosome Location	chr3:99326200-99326201
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs1398735	0.80[EUR][1000 genomes]
rs1513311	0.80[EUR][1000 genomes]
rs55805949	0.83[AMR][1000 genomes]
rs56047092	0.83[AMR][1000 genomes]
rs561391	0.80[EUR][1000 genomes]
rs584343	0.80[EUR][1000 genomes]
rs62281787	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62281788	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62281821	0.83[AMR][1000 genomes]
rs62281822	0.83[AMR][1000 genomes]
rs62281824	0.83[AMR][1000 genomes]
rs62281827	0.83[AMR][1000 genomes]
rs62283832	1.00[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs6440728	0.80[EUR][1000 genomes]
rs687240	0.80[EUR][1000 genomes]
rs7652503	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530026	chr3:98837320-99340537	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	esv3422853	chr3:99208019-99342748	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:99325600-99326400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr3:99326000-99326400	Enhancers	HSMMtube	muscle
3	chr3:99326000-99327400	Enhancers	HSMM	muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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