Variant report

Variant	rs62281822
Chromosome Location	chr3:99353669-99353670
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:99353467..99355994-chr3:99356446..99358256,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000144810	Chromatin interaction

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs1398735	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1398736	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1513311	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1814825	0.80[ASN][1000 genomes]
rs1818478	0.80[ASN][1000 genomes]
rs1967577	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4928208	0.80[ASN][1000 genomes]
rs55690806	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs55805949	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs56047092	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs561391	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs584343	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs58899534	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62281787	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62281788	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62281820	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62281821	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62281824	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62281827	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6440728	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6792073	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6792285	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6792442	0.83[AMR][1000 genomes]
rs687240	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7652503	0.81[EUR][1000 genomes]

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:99346400-99355800	Weak transcription	Hela-S3	cervix
2	chr3:99347200-99355800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr3:99349800-99354000	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr3:99350200-99353800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr3:99350400-99354000	Weak transcription	HMEC	breast
6	chr3:99350600-99354400	Enhancers	H1 Cell Line	embryonic stem cell
7	chr3:99351400-99355200	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr3:99351800-99354200	Enhancers	H9 Cell Line	embryonic stem cell
9	chr3:99352000-99354400	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr3:99352000-99354800	Enhancers	HUES48 Cell Line	embryonic stem cell
11	chr3:99352200-99353800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr3:99352200-99353800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr3:99352200-99354200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
14	chr3:99352400-99355400	Enhancers	HUVEC	blood vessel
15	chr3:99352600-99354200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr3:99352600-99354800	Enhancers	NH-A	brain
17	chr3:99352800-99353800	Enhancers	Aorta	Aorta
18	chr3:99352800-99354000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr3:99352800-99354600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr3:99352800-99355800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
21	chr3:99353200-99354200	Enhancers	iPS-20b Cell Line	embryonic stem cell
22	chr3:99353400-99353800	Weak transcription	Muscle Satellite Cultured Cells	--
23	chr3:99353400-99353800	Weak transcription	NHEK	skin
24	chr3:99353400-99354000	Enhancers	NHLF	lung
25	chr3:99353400-99355400	Enhancers	Osteobl	bone
26	chr3:99353600-99353800	Weak transcription	NHDF-Ad	bronchial
27	chr3:99353600-99354400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr3:99353600-99355000	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
29	chr3:99353600-99355400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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