Variant report

Variant	rs62281821
Chromosome Location	chr3:99352220-99352221
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs1398735	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1398736	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1513311	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1814825	0.80[ASN][1000 genomes]
rs1818478	0.80[ASN][1000 genomes]
rs1967577	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4928208	0.80[ASN][1000 genomes]
rs55690806	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs55805949	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs56047092	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs561391	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs584343	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs58899534	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62281787	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62281788	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62281820	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62281822	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62281824	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62281827	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6440728	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6792073	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6792285	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6792442	0.83[AMR][1000 genomes]
rs687240	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7652503	0.81[EUR][1000 genomes]

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:99341000-99352800	Weak transcription	Aorta	Aorta
2	chr3:99346400-99352800	Weak transcription	NHLF	lung
3	chr3:99346400-99355800	Weak transcription	Hela-S3	cervix
4	chr3:99346600-99352800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr3:99347000-99352600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr3:99347200-99355800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr3:99349600-99352800	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr3:99349800-99354000	Enhancers	iPS-15b Cell Line	embryonic stem cell
9	chr3:99350200-99353800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr3:99350400-99352600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr3:99350400-99352800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr3:99350400-99352800	Weak transcription	NHEK	skin
13	chr3:99350400-99354000	Weak transcription	HMEC	breast
14	chr3:99350600-99354400	Enhancers	H1 Cell Line	embryonic stem cell
15	chr3:99351000-99352600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr3:99351000-99352800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr3:99351400-99353600	Enhancers	iPS-18 Cell Line	embryonic stem cell
18	chr3:99351400-99355200	Enhancers	ES-I3 Cell Line	embryonic stem cell
19	chr3:99351600-99353600	Enhancers	HUES6 Cell Line	embryonic stem cell
20	chr3:99351800-99352600	Enhancers	iPS-20b Cell Line	embryonic stem cell
21	chr3:99351800-99353400	Enhancers	Fetal Intestine Large	intestine
22	chr3:99351800-99354200	Enhancers	H9 Cell Line	embryonic stem cell
23	chr3:99352000-99354400	Enhancers	HUES64 Cell Line	embryonic stem cell
24	chr3:99352000-99354800	Enhancers	HUES48 Cell Line	embryonic stem cell
25	chr3:99352200-99353800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr3:99352200-99353800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
27	chr3:99352200-99354200	Enhancers	ES-WA7 Cell Line	embryonic stem cell

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