Variant report

Variant	rs62281820
Chromosome Location	chr3:99347755-99347756
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs1398735	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1398736	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1513311	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1814825	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1818478	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1967577	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4928208	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs55690806	0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs55805949	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs56047092	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs561391	0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs584343	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs58899534	0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62281787	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62281788	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62281821	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62281822	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62281824	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62281827	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6440728	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6792073	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6792285	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs687240	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7652503	0.84[EUR][1000 genomes]

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:99341000-99352800	Weak transcription	Aorta	Aorta
2	chr3:99346400-99349200	Weak transcription	NHEK	skin
3	chr3:99346400-99352800	Weak transcription	NHLF	lung
4	chr3:99346400-99355800	Weak transcription	Hela-S3	cervix
5	chr3:99346600-99349200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr3:99346600-99349200	Weak transcription	HMEC	breast
7	chr3:99346600-99352800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr3:99347000-99347800	Enhancers	Muscle Satellite Cultured Cells	--
9	chr3:99347000-99352600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr3:99347200-99355800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links