Variant report

Variant	rs62281788
Chromosome Location	chr3:99344266-99344267
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs1398735	0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1398736	0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1513311	0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1814825	0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1818478	0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1967577	0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4928208	0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs55690806	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs55805949	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs56047092	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs561391	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs584343	0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs58833452	0.89[AFR][1000 genomes]
rs58899534	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs62281787	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62281820	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62281821	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62281822	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62281824	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62281827	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6440728	0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6792073	0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6792285	0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6792442	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs687240	0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7652503	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:99333600-99345800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr3:99340400-99346000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr3:99341000-99352800	Weak transcription	Aorta	Aorta
4	chr3:99341400-99344400	Weak transcription	HUVEC	blood vessel
5	chr3:99343000-99347200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr3:99343400-99344600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr3:99343400-99346400	Enhancers	Hela-S3	cervix
8	chr3:99343600-99344400	Enhancers	Muscle Satellite Cultured Cells	--
9	chr3:99343800-99346400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr3:99343800-99346600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr3:99343800-99347000	Enhancers	Osteobl	bone
12	chr3:99344000-99344800	Enhancers	NHLF	lung
13	chr3:99344000-99346600	Enhancers	NHDF-Ad	bronchial
14	chr3:99344200-99344400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr3:99344200-99344400	Enhancers	HMEC	breast
16	chr3:99344200-99344400	Enhancers	HSMM	muscle
17	chr3:99344200-99344800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr3:99344200-99345000	Weak transcription	GM12878-XiMat	blood

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