Variant report

Variant	rs56047092
Chromosome Location	chr3:99373021-99373022
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:99372823..99375416-chr3:99376039..99377991,2	K562	blood:

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs1398735	0.81[EUR][1000 genomes]
rs1513311	0.81[EUR][1000 genomes]
rs55690806	0.98[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs55805949	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs561391	0.81[EUR][1000 genomes]
rs584343	0.81[EUR][1000 genomes]
rs58899534	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62281787	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs62281788	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs62281820	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62281821	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62281822	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62281824	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62281827	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6440728	0.81[EUR][1000 genomes]
rs6792442	0.83[AMR][1000 genomes]
rs687240	0.81[EUR][1000 genomes]

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:99367200-99373400	Weak transcription	Esophagus	oesophagus
2	chr3:99370600-99373200	Genic enhancers	Muscle Satellite Cultured Cells	--
3	chr3:99370600-99375400	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr3:99370600-99378000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr3:99370800-99374400	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr3:99370800-99377200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr3:99370800-99377600	Weak transcription	HMEC	breast
8	chr3:99371000-99374000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr3:99371000-99375200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr3:99371200-99374200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr3:99371400-99374000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr3:99371400-99377000	Weak transcription	NHLF	lung
13	chr3:99371600-99377400	Weak transcription	HSMMtube	muscle
14	chr3:99371800-99374200	Weak transcription	H9 Cell Line	embryonic stem cell
15	chr3:99372000-99373600	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr3:99372200-99374200	Weak transcription	NH-A	brain
17	chr3:99372200-99377400	Weak transcription	Rectal Smooth Muscle	rectum
18	chr3:99372400-99373400	Enhancers	NHEK	skin
19	chr3:99372400-99377200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr3:99372400-99377600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr3:99372600-99373800	Weak transcription	Aorta	Aorta
22	chr3:99372600-99373800	Weak transcription	HSMM	muscle
23	chr3:99372600-99373800	Strong transcription	HUVEC	blood vessel
24	chr3:99372600-99373800	Weak transcription	NHDF-Ad	bronchial
25	chr3:99372600-99373800	Strong transcription	Osteobl	bone
26	chr3:99372600-99374000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr3:99372600-99377000	Weak transcription	Colon Smooth Muscle	Colon
28	chr3:99372600-99379200	Weak transcription	Lung	lung
29	chr3:99372800-99373200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr3:99372800-99373800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr3:99372800-99373800	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr3:99373000-99375000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr3:99373000-99377000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
34	chr3:99373000-99377000	Weak transcription	Right Atrium	heart

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