Variant report

Variant	rs55690806
Chromosome Location	chr3:99370099-99370100
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1398735	0.86[EUR][1000 genomes]
rs1398736	0.84[EUR][1000 genomes]
rs1513311	0.86[EUR][1000 genomes]
rs1967577	0.84[EUR][1000 genomes]
rs55805949	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs56047092	0.98[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs561391	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs584343	0.86[EUR][1000 genomes]
rs58899534	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62281787	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs62281788	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs62281820	0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62281821	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62281822	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62281824	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62281827	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6440728	0.86[EUR][1000 genomes]
rs6792073	0.84[EUR][1000 genomes]
rs6792285	0.84[EUR][1000 genomes]
rs687240	0.86[EUR][1000 genomes]
rs7652503	0.81[EUR][1000 genomes]

No data

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:99360000-99370200	Weak transcription	Right Atrium	heart
2	chr3:99364000-99370200	Weak transcription	Ovary	ovary
3	chr3:99365000-99370200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr3:99365000-99370200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr3:99365000-99370400	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr3:99365000-99371600	Enhancers	Breast Myoepithelial Primary Cells	Breast
7	chr3:99365200-99370200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr3:99366800-99372600	Genic enhancers	Osteobl	bone
9	chr3:99367200-99370200	Genic enhancers	HUVEC	blood vessel
10	chr3:99367200-99370400	Weak transcription	HUES6 Cell Line	embryonic stem cell
11	chr3:99367200-99370400	Weak transcription	Fetal Lung	lung
12	chr3:99367200-99372000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr3:99367200-99372000	Weak transcription	Aorta	Aorta
14	chr3:99367200-99372800	Weak transcription	Stomach Mucosa	stomach
15	chr3:99367200-99373400	Weak transcription	Esophagus	oesophagus
16	chr3:99367600-99370400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr3:99367800-99370200	Genic enhancers	Muscle Satellite Cultured Cells	--
18	chr3:99367800-99370200	Weak transcription	Fetal Stomach	stomach
19	chr3:99367800-99370800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr3:99367800-99371800	Weak transcription	NHEK	skin
21	chr3:99367800-99372800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr3:99368000-99370200	Weak transcription	Rectal Mucosa Donor 31	rectum
23	chr3:99368000-99372000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr3:99368200-99370200	Weak transcription	Rectal Smooth Muscle	rectum
25	chr3:99368200-99370200	Weak transcription	HSMMtube	muscle
26	chr3:99369000-99370200	Enhancers	NH-A	brain
27	chr3:99369000-99370600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr3:99369000-99373000	Genic enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr3:99369400-99371600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr3:99369600-99370600	Enhancers	Stomach Smooth Muscle	stomach
31	chr3:99369600-99371200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr3:99369600-99371400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr3:99369600-99372600	Enhancers	NHDF-Ad	bronchial
34	chr3:99369800-99370200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr3:99369800-99370800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
36	chr3:99369800-99371000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr3:99369800-99371200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
38	chr3:99369800-99371400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
39	chr3:99370000-99370400	Flanking Active TSS	NHLF	lung
40	chr3:99370000-99370600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
41	chr3:99370000-99370600	Enhancers	Adipose Nuclei	Adipose
42	chr3:99370000-99370600	Enhancers	Duodenum Smooth Muscle	Duodenum
43	chr3:99370000-99370600	Enhancers	Fetal Kidney	kidney
44	chr3:99370000-99370600	Enhancers	Skeletal Muscle Male	skeletal muscle
45	chr3:99370000-99370600	Enhancers	Hela-S3	cervix
46	chr3:99370000-99370800	Enhancers	A549	lung
47	chr3:99370000-99370800	Enhancers	HMEC	breast
48	chr3:99370000-99372600	Enhancers	Colon Smooth Muscle	Colon
49	chr3:99370000-99372600	Genic enhancers	HSMM	muscle

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