Variant report

Variant	rs561391
Chromosome Location	chr3:99345689-99345690
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs1398735	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1398736	0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1513311	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1814825	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1818478	1.00[CEU][hapmap];0.93[CHB][hapmap];0.83[JPT][hapmap];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1967577	0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2342465	0.83[JPT][hapmap]
rs4928208	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs55690806	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs55805949	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs56047092	0.81[EUR][1000 genomes]
rs584343	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs58899534	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs62281787	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62281788	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62281820	0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62281821	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62281822	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62281824	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62281827	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6440728	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6765840	0.83[JPT][hapmap]
rs6792073	0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6792285	0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6792442	0.80[EUR][1000 genomes]
rs687240	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7652503	0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:99333600-99345800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr3:99340400-99346000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr3:99341000-99352800	Weak transcription	Aorta	Aorta
4	chr3:99343000-99347200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr3:99343400-99346400	Enhancers	Hela-S3	cervix
6	chr3:99343800-99346400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr3:99343800-99346600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr3:99343800-99347000	Enhancers	Osteobl	bone
9	chr3:99344000-99346600	Enhancers	NHDF-Ad	bronchial
10	chr3:99344400-99346600	Enhancers	HUVEC	blood vessel
11	chr3:99344600-99346400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr3:99345000-99346200	Enhancers	GM12878-XiMat	blood
13	chr3:99345200-99346400	Enhancers	NHLF	lung
14	chr3:99345400-99346200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr3:99345400-99346400	Enhancers	Fetal Stomach	stomach
16	chr3:99345400-99347000	Flanking Active TSS	Muscle Satellite Cultured Cells	--
17	chr3:99345600-99346000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr3:99345600-99346400	Enhancers	HSMMtube	muscle
19	chr3:99345600-99346600	Enhancers	HMEC	breast
20	chr3:99345600-99346600	Enhancers	HSMM	muscle
21	chr3:99345600-99346600	Enhancers	NH-A	brain

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