Variant report
| Variant | rs1814825 |
|---|---|
| Chromosome Location | chr3:99321869-99321870 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr3:99313372..99317178-chr3:99319758..99322601,3 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000244464 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:18)
| rs_ID | r2[population] |
|---|---|
| rs1398735 | 0.87[AFR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs1398736 | 0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs1513311 | 0.85[AFR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs1818478 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1967577 | 0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs4928208 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs561391 | 0.92[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs584343 | 0.84[AFR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs62281787 | 0.89[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs62281788 | 0.89[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs62281820 | 0.81[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs62281821 | 0.80[ASN][1000 genomes] |
| rs62281822 | 0.80[ASN][1000 genomes] |
| rs6440728 | 0.81[AFR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs6792073 | 0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs6792285 | 0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs687240 | 0.92[EUR][1000 genomes] |
| rs7652503 | 0.97[EUR][1000 genomes];0.93[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv530026 | chr3:98837320-99340537 | ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 2 | esv3422853 | chr3:99208019-99342748 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:99320400-99322000 | Enhancers | H9 Derived Neuron Cultured Cells | ES cell derived |
