Variant report

Variant	rs485715
Chromosome Location	chr3:99343250-99343251
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1618635	0.87[AFR][1000 genomes]
rs1711553	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1818483	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs563041	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs595273	0.91[YRI][hapmap];0.84[AFR][1000 genomes]
rs640273	0.90[YRI][hapmap];0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6440724	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6764667	1.00[EUR][1000 genomes]
rs6803793	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs684701	0.91[YRI][hapmap];0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72940133	1.00[EUR][1000 genomes]

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:99333600-99345800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr3:99339200-99343600	Weak transcription	Muscle Satellite Cultured Cells	--
3	chr3:99340400-99344200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr3:99340400-99346000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr3:99340600-99344000	Weak transcription	NHDF-Ad	bronchial
6	chr3:99341000-99343400	Weak transcription	Hela-S3	cervix
7	chr3:99341000-99352800	Weak transcription	Aorta	Aorta
8	chr3:99341400-99344400	Weak transcription	HUVEC	blood vessel
9	chr3:99342800-99344000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr3:99343000-99343400	Enhancers	Fetal Intestine Large	intestine
11	chr3:99343000-99347200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr3:99343200-99344200	Enhancers	GM12878-XiMat	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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