Variant report

Variant	rs1621535
Chromosome Location	chr8:107568983-107568984
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10109929	0.95[ASN][1000 genomes]
rs10112029	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs1901778	0.91[ASN][1000 genomes]
rs1901779	0.91[ASN][1000 genomes]
rs3101541	0.85[JPT][hapmap]
rs3110431	0.83[JPT][hapmap]
rs3134120	0.90[JPT][hapmap]
rs7815303	0.97[ASN][1000 genomes]
rs7818918	0.98[ASN][1000 genomes]
rs7837012	0.98[ASN][1000 genomes]
rs7843866	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533134	chr8:107307812-107670002	Weak transcription Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:107512400-107620200	Weak transcription	Aorta	Aorta
2	chr8:107530400-107572800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr8:107552600-107570600	Weak transcription	NH-A	brain
4	chr8:107565600-107570000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr8:107568200-107569600	Enhancers	Breast Myoepithelial Primary Cells	Breast
6	chr8:107568200-107570800	Enhancers	Primary monocytes fromperipheralblood	blood
7	chr8:107568200-107572800	Enhancers	Primary neutrophils fromperipheralblood	blood
8	chr8:107568400-107569200	Enhancers	Colon Smooth Muscle	Colon
9	chr8:107568400-107569400	Enhancers	Cortex derived primary cultured neurospheres	brain
10	chr8:107568400-107569400	Enhancers	Adipose Nuclei	Adipose
11	chr8:107568400-107569600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr8:107568400-107569600	Enhancers	Liver	Liver
13	chr8:107568600-107569200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr8:107568600-107569200	Enhancers	Brain Anterior Caudate	brain
15	chr8:107568600-107569200	Enhancers	NHLF	lung
16	chr8:107568600-107569400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr8:107568600-107569600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
18	chr8:107568600-107569800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr8:107568800-107574000	Weak transcription	Stomach Smooth Muscle	stomach

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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