Variant report

Variant	rs162613
Chromosome Location	chr9:102038653-102038654
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1699407	1.00[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs1699419	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1746154	0.92[AMR][1000 genomes]
rs182762	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs184501	1.00[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs189043	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs193020	0.92[AMR][1000 genomes]
rs228635	0.96[AMR][1000 genomes]
rs328959	1.00[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs410180	0.92[AMR][1000 genomes]
rs701373	0.94[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs790189	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs790191	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893620	chr9:102029791-102194921	Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv520193	chr9:102037970-102039043	Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:102036800-102039800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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