Variant report

Variant	rs1699407
Chromosome Location	chr9:102031308-102031309
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs162613	1.00[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs1699419	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1746154	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs182762	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs184501	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs189043	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs193019	0.81[AFR][1000 genomes]
rs193020	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs228635	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs328959	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs410180	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs58028871	0.86[EUR][1000 genomes]
rs701373	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7860097	0.86[EUR][1000 genomes]
rs790189	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs790191	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893620	chr9:102029791-102194921	Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:102022200-102034800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr9:102022200-102038000	Weak transcription	Aorta	Aorta
3	chr9:102029400-102031400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr9:102029400-102034600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr9:102029800-102034800	Weak transcription	GM12878-XiMat	blood
6	chr9:102030600-102032400	Enhancers	HUVEC	blood vessel
7	chr9:102030800-102031800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr9:102031000-102031600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr9:102031000-102031800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr9:102031000-102031800	Enhancers	Osteobl	bone
11	chr9:102031000-102032000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr9:102031000-102032000	Enhancers	NHLF	lung
13	chr9:102031200-102031600	Enhancers	NH-A	brain
14	chr9:102031200-102032200	Enhancers	NHDF-Ad	bronchial

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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