Variant report

Variant	rs58028871
Chromosome Location	chr9:102021865-102021866
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:102021323..102023427-chr9:102025498..102028226,2	K562	blood:
2	chr9:102016447..102018282-chr9:102021293..102023502,2	K562	blood:
3	chr9:102021323..102023178-chr9:102026226..102028226,2	K562	blood:
4	chr9:101983281..101986775-chr9:102018157..102023466,4	MCF-7	breast:
5	chr9:102013065..102016207-chr9:102018717..102022056,3	K562	blood:

Variant related genes	Relation type
ENSG00000106803	Chromatin interaction
ENSG00000119523	Chromatin interaction

rs_ID	r²[population]
rs1699407	0.86[EUR][1000 genomes]
rs1699419	0.86[EUR][1000 genomes]
rs1746154	0.88[EUR][1000 genomes]
rs182762	0.86[EUR][1000 genomes]
rs184501	0.86[EUR][1000 genomes]
rs189043	0.86[EUR][1000 genomes]
rs193020	0.88[EUR][1000 genomes]
rs228635	0.88[EUR][1000 genomes]
rs328959	0.86[EUR][1000 genomes]
rs701373	0.86[EUR][1000 genomes]
rs7860097	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs790189	0.83[EUR][1000 genomes]
rs790191	0.86[EUR][1000 genomes]

Chromatin state (count:102 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:102016600-102022200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
2	chr9:102016800-102022200	Weak transcription	Primary B cells from cord blood	blood
3	chr9:102016800-102022800	Enhancers	Thymus	Thymus
4	chr9:102020400-102022600	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
5	chr9:102020600-102022200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr9:102020800-102022200	Enhancers	HSMMtube	muscle
7	chr9:102021000-102022200	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr9:102021200-102022000	Active TSS	Liver	Liver
9	chr9:102021200-102022000	Active TSS	Colon Smooth Muscle	Colon
10	chr9:102021200-102022000	Enhancers	Fetal Heart	heart
11	chr9:102021200-102022000	Active TSS	Skeletal Muscle Female	skeletal muscle
12	chr9:102021200-102022200	Enhancers	HUES48 Cell Line	embryonic stem cell
13	chr9:102021200-102022200	Active TSS	Monocytes-CD14+_RO01746	blood
14	chr9:102021400-102022000	Active TSS	Primary monocytes fromperipheralblood	blood
15	chr9:102021400-102022000	Active TSS	Brain Anterior Caudate	brain
16	chr9:102021400-102022000	Active TSS	Brain Cingulate Gyrus	brain
17	chr9:102021400-102022000	Active TSS	Brain Inferior Temporal Lobe	brain
18	chr9:102021400-102022000	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
19	chr9:102021400-102022000	Active TSS	Colonic Mucosa	Colon
20	chr9:102021400-102022000	Active TSS	Duodenum Smooth Muscle	Duodenum
21	chr9:102021400-102022000	Active TSS	Placenta	Placenta
22	chr9:102021400-102022000	Active TSS	Ovary	ovary
23	chr9:102021400-102022200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr9:102021400-102022200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr9:102021400-102022200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
26	chr9:102021400-102022200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr9:102021400-102022200	Flanking Active TSS	Muscle Satellite Cultured Cells	--
28	chr9:102021400-102022200	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr9:102021400-102022200	Flanking Active TSS	Fetal Muscle Leg	muscle
30	chr9:102021400-102022200	Active TSS	Psoas Muscle	Psoas
31	chr9:102021400-102022200	Active TSS	Right Atrium	heart
32	chr9:102021400-102022400	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr9:102021400-102022400	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr9:102021400-102022400	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr9:102021400-102022400	Flanking Active TSS	Adipose Nuclei	Adipose
36	chr9:102021400-102022400	Flanking Active TSS	Brain Angular Gyrus	brain
37	chr9:102021400-102022400	Active TSS	Pancreatic Islets	Pancreatic Islet
38	chr9:102021400-102022400	Flanking Active TSS	Fetal Thymus	thymus
39	chr9:102021400-102022400	Flanking Active TSS	Stomach Smooth Muscle	stomach
40	chr9:102021400-102022400	Flanking Active TSS	K562	blood
41	chr9:102021400-102022400	Flanking Active TSS	Osteobl	bone
42	chr9:102021400-102022600	Enhancers	Fetal Brain Male	brain
43	chr9:102021600-102022000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
44	chr9:102021600-102022000	Enhancers	Primary T helper cells fromperipheralblood	blood
45	chr9:102021600-102022000	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
46	chr9:102021600-102022000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
47	chr9:102021600-102022000	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
48	chr9:102021600-102022000	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
49	chr9:102021600-102022000	Active TSS	Brain Substantia Nigra	brain
50	chr9:102021600-102022000	Active TSS	Duodenum Mucosa	Duodenum

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