Variant report

Variant	rs1699419
Chromosome Location	chr9:102061138-102061139
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:102054861..102056372-chr9:102059573..102062558,2	K562	blood:
2	chr9:102059207..102064374-chr9:102578752..102582809,5	MCF-7	breast:
3	chr9:102060615..102063938-chr9:102065516..102068586,3	K562	blood:

Variant related genes	Relation type
ENSG00000255815	Chromatin interaction
ENSG00000237461	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs162613	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs162617	1.00[CEU][hapmap]
rs1699407	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1746154	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs182762	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs184501	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs189043	1.00[CEU][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs193019	0.91[YRI][hapmap];0.97[AFR][1000 genomes]
rs193020	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs228635	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs328959	0.80[AFR][1000 genomes];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs410180	0.85[EUR][1000 genomes]
rs58028871	0.86[EUR][1000 genomes]
rs701373	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7860097	0.86[EUR][1000 genomes]
rs790189	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs790191	1.00[CEU][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893620	chr9:102029791-102194921	Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:102058800-102063600	Weak transcription	K562	blood
2	chr9:102059200-102061200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr9:102059200-102061400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr9:102059200-102062400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr9:102059200-102068600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr9:102059400-102061200	Weak transcription	NHLF	lung
7	chr9:102059400-102061600	Weak transcription	Skeletal Muscle Male	skeletal muscle
8	chr9:102059400-102061800	Weak transcription	Fetal Brain Male	brain
9	chr9:102059400-102062800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
10	chr9:102060000-102062400	Enhancers	ES-I3 Cell Line	embryonic stem cell
11	chr9:102060200-102061600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr9:102060200-102061800	Enhancers	H9 Cell Line	embryonic stem cell
13	chr9:102060400-102061400	Weak transcription	HUES64 Cell Line	embryonic stem cell
14	chr9:102060400-102062200	Enhancers	iPS-18 Cell Line	embryonic stem cell
15	chr9:102060400-102062400	Enhancers	HUES6 Cell Line	embryonic stem cell
16	chr9:102060600-102062200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
17	chr9:102060600-102063000	Enhancers	iPS-15b Cell Line	embryonic stem cell
18	chr9:102060800-102061600	Enhancers	HUES48 Cell Line	embryonic stem cell
19	chr9:102061000-102062200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr9:102061000-102062200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr9:102061000-102062400	Enhancers	ES-WA7 Cell Line	embryonic stem cell

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