Variant report

Variant	rs790189
Chromosome Location	chr9:102032394-102032395
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs162613	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs162617	1.00[CEU][hapmap];0.95[YRI][hapmap]
rs1699407	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1699419	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1746154	1.00[CEU][hapmap];1.00[GIH][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs182762	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs184501	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs189043	1.00[CEU][hapmap];0.96[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs193020	1.00[CEU][hapmap];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs228635	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs328957	0.96[YRI][hapmap]
rs328959	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs410180	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs58028871	0.83[EUR][1000 genomes]
rs701373	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7860097	0.83[EUR][1000 genomes]
rs790191	0.92[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.89[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893620	chr9:102029791-102194921	Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:102022200-102034800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr9:102022200-102038000	Weak transcription	Aorta	Aorta
3	chr9:102029400-102034600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr9:102029800-102034800	Weak transcription	GM12878-XiMat	blood
5	chr9:102030600-102032400	Enhancers	HUVEC	blood vessel
6	chr9:102031800-102032800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr9:102031800-102036600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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