Variant report

Variant	rs193020
Chromosome Location	chr9:102022853-102022854
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:102021323..102023427-chr9:102025498..102028226,2	K562	blood:
2	chr9:102016447..102018282-chr9:102021293..102023502,2	K562	blood:
3	chr9:102021323..102023178-chr9:102026226..102028226,2	K562	blood:
4	chr9:101983281..101986775-chr9:102018157..102023466,4	MCF-7	breast:
5	chr9:101934883..101936610-chr9:102021893..102023523,2	K562	blood:

Variant related genes	Relation type
ENSG00000119523	Chromatin interaction
ENSG00000106803	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs162613	0.92[AMR][1000 genomes]
rs162617	1.00[CEU][hapmap]
rs1699407	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1699419	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1746154	1.00[CEU][hapmap];0.93[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs182762	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs184501	1.00[CEU][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs189043	1.00[CEU][hapmap];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs228635	1.00[CEU][hapmap];0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs328959	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs410180	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs58028871	0.88[EUR][1000 genomes]
rs701373	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7860097	0.88[EUR][1000 genomes]
rs790189	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs790191	1.00[CEU][hapmap];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:102022000-102023400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr9:102022200-102023000	Enhancers	Fetal Muscle Leg	muscle
3	chr9:102022200-102023200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr9:102022200-102028200	Weak transcription	Spleen	Spleen
5	chr9:102022200-102028800	Weak transcription	Psoas Muscle	Psoas
6	chr9:102022200-102028800	Weak transcription	Monocytes-CD14+_RO01746	blood
7	chr9:102022200-102034800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr9:102022200-102038000	Weak transcription	Aorta	Aorta
9	chr9:102022400-102023600	Enhancers	Fetal Heart	heart
10	chr9:102022400-102024400	Enhancers	Fetal Thymus	thymus
11	chr9:102022400-102025200	Weak transcription	Primary B cells from peripheral blood	blood
12	chr9:102022400-102028600	Weak transcription	Primary monocytes fromperipheralblood	blood
13	chr9:102022400-102028800	Weak transcription	Adipose Nuclei	Adipose
14	chr9:102022600-102023000	Enhancers	Skeletal Muscle Male	skeletal muscle
15	chr9:102022600-102023600	Enhancers	Brain Anterior Caudate	brain
16	chr9:102022600-102024200	Weak transcription	GM12878-XiMat	blood
17	chr9:102022600-102028800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
18	chr9:102022800-102024200	Weak transcription	Skeletal Muscle Female	skeletal muscle
19	chr9:102022800-102028400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr9:102022800-102028600	Weak transcription	Brain Cingulate Gyrus	brain
21	chr9:102022800-102028600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
22	chr9:102022800-102028800	Weak transcription	Primary T cells from cord blood	blood
23	chr9:102022800-102028800	Weak transcription	Brain Inferior Temporal Lobe	brain

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