Variant report

Variant	rs1677073
Chromosome Location	chr12:21810128-21810129
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAX	chr12:21809699-21811169	ECC-1	luminal epithelium:	n/a	chr12:21810341-21810352 chr12:21810784-21810794 chr12:21810919-21810929 chr12:21810137-21810146 chr12:21810781-21810791
2	POLR2A	chr12:21809796-21811182	ECC-1	luminal epithelium:	n/a	n/a
3	BCL3	chr12:21809563-21811078	A549	lung:	n/a	chr12:21810566-21810575 chr12:21810400-21810409 chr12:21810534-21810547
4	MAZ	chr12:21809921-21811110	K562	blood:	n/a	chr12:21810341-21810352 chr12:21810784-21810794 chr12:21810919-21810929 chr12:21810137-21810146 chr12:21810781-21810791
5	POLR2A	chr12:21809803-21811155	PBDE	blood:	n/a	n/a
6	POLR2A	chr12:21809845-21811030	Hela-S3	cervix:	n/a	n/a
7	POLR2A	chr12:21809612-21811117	H1-hESC	embryonic stem cell:	n/a	n/a
8	ATF3	chr12:21810097-21811159	A549	lung:	n/a	chr12:21810786-21810795
9	GATA3	chr12:21810050-21811195	A549	lung:	n/a	chr12:21810640-21810648 chr12:21810124-21810134
10	POLR2A	chr12:21809698-21811173	GM12892	blood:	n/a	n/a
11	USF1	chr12:21809945-21810989	SK-N-SH	brain:	n/a	chr12:21810532-21810548
12	CHD1	chr12:21808698-21810976	H1-hESC	embryonic stem cell:	n/a	chr12:21809894-21809904
13	RELA	chr12:21809755-21811122	GM18505	blood:	n/a	n/a
14	ETS1	chr12:21810057-21810967	A549	lung:	n/a	chr12:21810852-21810865 chr12:21810323-21810334 chr12:21810784-21810795
15	RUNX3	chr12:21810022-21811086	GM12878	blood:	n/a	n/a
16	POLR2A	chr12:21809881-21811073	GM12891	blood:	n/a	n/a
17	STAT5A	chr12:21810106-21810543	GM12878	blood:	n/a	n/a
18	REST	chr12:21809764-21811116	HL-60	blood:	n/a	chr12:21810192-21810200 chr12:21810322-21810335 chr12:21810400-21810409 chr12:21809930-21809948
19	YY1	chr12:21809902-21811112	ECC-1	luminal epithelium:	n/a	chr12:21810786-21810795 chr12:21810503-21810514 chr12:21810783-21810797
20	JUND	chr12:21809825-21811135	A549	lung:	n/a	n/a
21	SIN3A	chr12:21809620-21810996	GM12878	blood:	n/a	chr12:21810400-21810410
22	POLR2A	chr12:21809802-21811128	IMR90	lung:	n/a	n/a
23	POLR2A	chr12:21809685-21811148	K562	blood:	n/a	n/a
24	POLR2A	chr12:21809471-21811125	GM12878	blood:	n/a	n/a
25	MYC	chr12:21809513-21810961	MCF10A-Er-Src	breast:	n/a	chr12:21810341-21810352 chr12:21810784-21810794 chr12:21810919-21810929 chr12:21810137-21810146 chr12:21810781-21810791
26	USF1	chr12:21810099-21811028	A549	lung:	n/a	chr12:21810532-21810548
27	POLR2A	chr12:21809891-21811205	HUVEC	blood vessel:	n/a	n/a
28	POLR2A	chr12:21809874-21811173	K562	blood:	n/a	n/a
29	POLR2A	chr12:21809877-21811054	A549	lung:	n/a	n/a
30	POLR2A	chr12:21809778-21811245	GM19193	blood:	n/a	n/a
31	MXI1	chr12:21810079-21810972	K562	blood:	n/a	n/a
32	YY1	chr12:21809898-21810977	NT2-D1	testis:	n/a	chr12:21810786-21810795 chr12:21810503-21810514 chr12:21810783-21810797
33	MAX	chr12:21809713-21811102	H1-hESC	embryonic stem cell:	n/a	chr12:21810341-21810352 chr12:21810784-21810794 chr12:21810919-21810929 chr12:21810137-21810146 chr12:21810781-21810791
34	MAX	chr12:21809838-21811013	HUVEC	blood vessel:	n/a	chr12:21810341-21810352 chr12:21810784-21810794 chr12:21810919-21810929 chr12:21810137-21810146 chr12:21810781-21810791
35	MAX	chr12:21809717-21811087	ECC-1	luminal epithelium:	n/a	chr12:21810341-21810352 chr12:21810784-21810794 chr12:21810919-21810929 chr12:21810137-21810146 chr12:21810781-21810791
36	ATF3	chr12:21810089-21811075	A549	lung:	n/a	chr12:21810786-21810795
37	MYC	chr12:21809323-21811088	MCF10A-Er-Src	breast:	n/a	chr12:21810341-21810352 chr12:21810784-21810794 chr12:21810919-21810929 chr12:21810137-21810146 chr12:21810781-21810791
38	POLR2A	chr12:21809796-21811220	SK-N-SH	brain:	n/a	n/a
39	BHLHE40	chr12:21809792-21811082	GM12878	blood:	n/a	chr12:21810532-21810548
40	POLR2A	chr12:21809974-21811155	K562	blood:	n/a	n/a
41	NFATC1	chr12:21809771-21811096	GM12878	blood:	n/a	n/a
42	POLR2A	chr12:21809706-21811196	GM12892	blood:	n/a	n/a
43	YY1	chr12:21809816-21811048	GM12892	blood:	n/a	chr12:21809892-21809903 chr12:21810786-21810795 chr12:21810503-21810514 chr12:21810783-21810797
44	TBP	chr12:21809785-21811168	K562	blood:	n/a	n/a
45	USF1	chr12:21809810-21810504	SK-N-SH_RA	brain:	n/a	n/a
46	YY1	chr12:21810042-21811161	SK-N-SH	brain:	n/a	chr12:21810786-21810795 chr12:21810503-21810514 chr12:21810783-21810797
47	POLR2A	chr12:21809865-21811232	PFSK-1	brain:	n/a	n/a
48	CEBPB	chr12:21809870-21810971	Hela-S3	cervix:	n/a	n/a
49	POLR2A	chr12:21809282-21811114	Hela-S3	cervix:	n/a	n/a
50	POLR2A	chr12:21808471-21811183	GM12891	blood:	n/a	n/a

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr12:21810092-21810142	Caco-2	colon:	n/a
2	chr12:21810092-21810142	A549	lung:	n/a
3	chr12:21810092-21810142	HAEpiC	amniotic membrane:	n/a
4	chr12:21810092-21810142	HEEpiC	esophagus:	n/a
5	chr12:21810092-21810142	IMR90	lung:	fetal
6	chr12:21810092-21810142	ProgFib	skin:	n/a
7	chr12:21810092-21810142	CMK	blood:	n/a
8	chr12:21810092-21810142	HL-60	blood:	n/a
9	chr12:21810092-21810142	HIPEpiC	eye:	n/a
10	chr12:21810092-21810142	GM06990	blood:	n/a
11	chr12:21810092-21810142	SKMC	muscle:	n/a
12	chr12:21810092-21810142	NH-A	brain:	n/a
13	chr12:21810092-21810142	Hepatocyte	liver:	n/a
14	chr12:21810092-21810142	HRCEpiC	kidney:	n/a
15	chr12:21810092-21810142	SK-N-SH_RA	brain:	n/a
16	chr12:21810092-21810142	PFSK-1	brain:	n/a
17	chr12:21810092-21810142	LNCaP	prostate:	n/a
18	chr12:21810092-21810142	ECC-1	luminal epithelium:	n/a
19	chr12:21810092-21810142	HRPEpiC	eye:	n/a
20	chr12:21810092-21810142	AG09319	gingival:	n/a
21	chr12:21810092-21810142	Hela-S3	cervix:	n/a
22	chr12:21810092-21810142	H1-hESC	embryonic stem cell:	embryo
23	chr12:21810092-21810142	HMEC	breast:	n/a
24	chr12:21810092-21810142	GM19239	blood:	n/a
25	chr12:21810092-21810142	HNPCEpiC	eye:	n/a
26	chr12:21810092-21810142	SAEC	small airway:	n/a
27	chr12:21810092-21810142	K562	blood:	n/a
28	chr12:21810092-21810142	ovcar-3	ovarian:	n/a
29	chr12:21810092-21810142	SK-N-MC	brain:	n/a
30	chr12:21810092-21810142	GM12892	blood:	n/a
31	chr12:21810092-21810142	HCPEpiC	choroid plexus:	n/a
32	chr12:21810092-21810142	Jurkat	blood:	n/a
33	chr12:21810092-21810142	T-47D	breast:	n/a
34	chr12:21810092-21810142	NT2-D1	testis:	n/a
35	chr12:21810092-21810142	HEK293	kidney:	embryo
36	chr12:21810092-21810142	U87	brain:	n/a
37	chr12:21810092-21810142	AoSMC	blood vessel:	n/a
38	chr12:21810092-21810142	HCT-116	colon:	n/a
39	chr12:21810092-21810142	PANC-1	pancreas:	n/a
40	chr12:21810092-21810142	NHBE	bronchial:	n/a
41	chr12:21810092-21810142	HRE	kidney:	n/a
42	chr12:21810092-21810142	AG04450	lung:	fetal
43	chr12:21810092-21810142	NHDF-neo	bronchial:	n/a
44	chr12:21810092-21810142	HCF	heart:	n/a
45	chr12:21810092-21810142	PrEC	prostate:	n/a
46	chr12:21810092-21810142	AG09309	skin:	n/a
47	chr12:21810092-21810142	HepG2	liver:	n/a
48	chr12:21810092-21810142	RPTEC	kidney:	n/a
49	chr12:21810092-21810142	GM12878	blood:	n/a
50	chr12:21810092-21810142	GM12891	blood:	n/a

No.	Distal block	Cell Line	Cell type
1	chr12:21589456..21592020-chr12:21808889..21812230,4	K562	blood:
2	chr12:21809057..21812387-chr12:22198017..22201408,5	K562	blood:
3	chr12:21653197..21655257-chr12:21809726..21811694,2	K562	blood:
4	chr12:21809958..21810886-chr16:4526148..4526888,2	HCT-116	colon:
5	chr12:21809676..21810203-chr9:455132..455632,2	NB4	blood:

Variant related genes	Relation type
LDHB	TF binding region
LDHB	CpG island
ENSG00000004700	Chromatin interaction
ENSG00000111711	Chromatin interaction
ENSG00000153406	Chromatin interaction
ENSG00000121350	Chromatin interaction
ENSG00000103415	Chromatin interaction
ENSG00000111726	Chromatin interaction

Extended variants
information (count: 163 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:158)

rs_ID	r²[population]
rs1012354	1.00[EUR][1000 genomes]
rs1030452	0.83[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1030453	0.83[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1072992	0.86[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1072993	0.83[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10841863	1.00[EUR][1000 genomes]
rs10841864	1.00[EUR][1000 genomes]
rs10841865	1.00[EUR][1000 genomes]
rs10841866	1.00[EUR][1000 genomes]
rs11829561	1.00[EUR][1000 genomes]
rs11835091	1.00[EUR][1000 genomes]
rs1427830	1.00[EUR][1000 genomes]
rs1478293	0.83[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1540405	0.83[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1614040	0.85[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1616390	0.82[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1624003	1.00[EUR][1000 genomes]
rs1626167	1.00[EUR][1000 genomes]
rs1626303	1.00[EUR][1000 genomes]
rs1629683	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1630514	1.00[EUR][1000 genomes]
rs1650272	1.00[EUR][1000 genomes]
rs1650277	1.00[EUR][1000 genomes]
rs1650278	1.00[EUR][1000 genomes]
rs1650279	1.00[EUR][1000 genomes]
rs1650280	1.00[EUR][1000 genomes]
rs1650282	1.00[EUR][1000 genomes]
rs1650285	1.00[EUR][1000 genomes]
rs1650286	0.83[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1650287	0.83[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1650288	1.00[EUR][1000 genomes]
rs1650289	0.86[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1650290	0.82[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1650291	0.82[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1650292	1.00[EUR][1000 genomes]
rs1650293	0.86[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1650295	0.83[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1650297	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs1650300	0.83[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1650301	0.83[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1650305	0.86[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1650306	0.82[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1650310	0.83[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1650312	0.81[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1650314	0.86[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1650315	0.86[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1650318	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1677074	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1677078	0.85[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1677079	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1677085	0.86[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1677088	1.00[EUR][1000 genomes]
rs1677090	1.00[EUR][1000 genomes]
rs1677092	1.00[EUR][1000 genomes]
rs1677093	1.00[EUR][1000 genomes]
rs1677094	1.00[EUR][1000 genomes]
rs1677095	1.00[EUR][1000 genomes]
rs1677096	1.00[EUR][1000 genomes]
rs1677097	1.00[EUR][1000 genomes]
rs1677098	1.00[EUR][1000 genomes]
rs1677100	1.00[EUR][1000 genomes]
rs1677104	0.83[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1677105	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1677106	0.87[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1677107	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1677109	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1677110	0.83[YRI][hapmap];0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs1677111	0.87[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1677113	1.00[EUR][1000 genomes]
rs1677118	1.00[EUR][1000 genomes]
rs1677124	1.00[EUR][1000 genomes]
rs1677125	0.83[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1677126	0.81[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1677127	0.84[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1677131	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1677132	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1677133	0.82[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1677135	1.00[EUR][1000 genomes]
rs1677136	1.00[EUR][1000 genomes]
rs1677138	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1677139	1.00[EUR][1000 genomes]
rs1677141	1.00[EUR][1000 genomes]
rs1813751	1.00[EUR][1000 genomes]
rs2077044	1.00[EUR][1000 genomes]
rs2217238	1.00[EUR][1000 genomes]
rs2247376	0.87[AFR][1000 genomes]
rs255449	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs255452	1.00[EUR][1000 genomes]
rs2617117	1.00[EUR][1000 genomes]
rs4237915	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4438091	1.00[EUR][1000 genomes]
rs4762714	1.00[EUR][1000 genomes]
rs4762716	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4762856	1.00[EUR][1000 genomes]
rs4762858	1.00[EUR][1000 genomes]
rs4762859	1.00[EUR][1000 genomes]
rs4762862	1.00[EUR][1000 genomes]
rs56013787	1.00[EUR][1000 genomes]
rs56035640	1.00[EUR][1000 genomes]
rs56066637	1.00[EUR][1000 genomes]
rs56160727	1.00[EUR][1000 genomes]
rs56271252	1.00[EUR][1000 genomes]
rs56729740	1.00[EUR][1000 genomes]
rs56871137	1.00[EUR][1000 genomes]
rs56994698	1.00[EUR][1000 genomes]
rs57115374	1.00[EUR][1000 genomes]
rs57200111	1.00[EUR][1000 genomes]
rs57338327	1.00[EUR][1000 genomes]
rs57842305	1.00[EUR][1000 genomes]
rs58465040	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58527132	1.00[EUR][1000 genomes]
rs59247664	1.00[EUR][1000 genomes]
rs59468844	1.00[EUR][1000 genomes]
rs59541120	1.00[EUR][1000 genomes]
rs60486179	1.00[EUR][1000 genomes]
rs60632805	1.00[EUR][1000 genomes]
rs60652753	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61187969	1.00[EUR][1000 genomes]
rs61482461	1.00[EUR][1000 genomes]
rs7135799	0.86[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7299674	1.00[EUR][1000 genomes]
rs7299680	1.00[EUR][1000 genomes]
rs7300051	1.00[EUR][1000 genomes]
rs73249228	1.00[EUR][1000 genomes]
rs73249231	1.00[EUR][1000 genomes]
rs73249234	1.00[EUR][1000 genomes]
rs73249241	1.00[EUR][1000 genomes]
rs73249265	1.00[EUR][1000 genomes]
rs73249266	1.00[EUR][1000 genomes]
rs73249268	1.00[EUR][1000 genomes]
rs73249276	1.00[EUR][1000 genomes]
rs73249282	1.00[EUR][1000 genomes]
rs73262386	1.00[EUR][1000 genomes]
rs736047	1.00[EUR][1000 genomes]
rs74066770	1.00[EUR][1000 genomes]
rs74067628	1.00[EUR][1000 genomes]
rs74069327	1.00[EUR][1000 genomes]
rs74069332	1.00[EUR][1000 genomes]
rs74069333	1.00[EUR][1000 genomes]
rs74069343	1.00[EUR][1000 genomes]
rs74069345	1.00[EUR][1000 genomes]
rs74069349	1.00[EUR][1000 genomes]
rs74069350	1.00[EUR][1000 genomes]
rs74069351	1.00[EUR][1000 genomes]
rs74069352	1.00[EUR][1000 genomes]
rs74069353	1.00[EUR][1000 genomes]
rs74069354	1.00[EUR][1000 genomes]
rs74069355	1.00[EUR][1000 genomes]
rs74069356	1.00[EUR][1000 genomes]
rs74069357	1.00[EUR][1000 genomes]
rs74069362	1.00[EUR][1000 genomes]
rs74069363	1.00[EUR][1000 genomes]
rs759931	1.00[EUR][1000 genomes]
rs759932	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs759933	1.00[EUR][1000 genomes]
rs759934	0.83[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7974267	1.00[EUR][1000 genomes]
rs962947	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043936	chr12:21562673-21979030	ZNF genes & repeats Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
2	nsv557741	chr12:21578559-22169854	Strong transcription Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
3	nsv469164	chr12:21688900-21966701	Weak transcription Bivalent/Poised TSS Strong transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
4	nsv557744	chr12:21688900-21966701	Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
5	nsv832349	chr12:21749093-21930695	Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Active TSS Genic enhancers Enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:21806000-21810600	Transcr. at gene 5' and 3'	iPS-20b Cell Line	embryonic stem cell
2	chr12:21807000-21810200	Transcr. at gene 5' and 3'	A549	lung
3	chr12:21807600-21811400	Active TSS	GM12878-XiMat	blood
4	chr12:21807800-21810200	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
5	chr12:21808000-21810200	Active TSS	Right Atrium	heart
6	chr12:21808200-21810800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr12:21808200-21811000	Active TSS	Primary T cells fromperipheralblood	blood
8	chr12:21808200-21811200	Active TSS	iPS-15b Cell Line	embryonic stem cell
9	chr12:21808200-21811200	Active TSS	K562	blood
10	chr12:21808400-21810600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr12:21808400-21811200	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr12:21808400-21811200	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr12:21808600-21810800	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr12:21808600-21810800	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
15	chr12:21808600-21810800	Flanking Active TSS	Primary hematopoietic stem cells	blood
16	chr12:21808600-21810800	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
17	chr12:21808600-21811200	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr12:21808600-21811200	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr12:21808600-21811200	Active TSS	Brain Substantia Nigra	brain
20	chr12:21808600-21811200	Active TSS	Ovary	ovary
21	chr12:21808600-21811200	Active TSS	Rectal Mucosa Donor 29	rectum
22	chr12:21808600-21811200	Active TSS	Right Ventricle	heart
23	chr12:21808600-21811400	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
24	chr12:21808600-21811800	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
25	chr12:21808800-21811200	Active TSS	H1 Cell Line	embryonic stem cell
26	chr12:21808800-21811200	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
27	chr12:21808800-21811200	Active TSS	Psoas Muscle	Psoas
28	chr12:21808800-21811600	Active TSS	Fetal Kidney	kidney
29	chr12:21809000-21810400	Flanking Active TSS	Primary B cells from cord blood	blood
30	chr12:21809000-21810400	Flanking Active TSS	Adipose Nuclei	Adipose
31	chr12:21809000-21810800	Active TSS	Primary T helper memory cells from peripheral blood 2	blood
32	chr12:21809000-21810800	Transcr. at gene 5' and 3'	Primary T helper 17 cells PMA-I stimulated	--
33	chr12:21809000-21811200	Active TSS	ES-I3 Cell Line	embryonic stem cell
34	chr12:21809000-21811200	Active TSS	H9 Cell Line	embryonic stem cell
35	chr12:21809000-21811200	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
36	chr12:21809000-21811200	Active TSS	Primary T helper naive cells fromperipheralblood	blood
37	chr12:21809000-21811200	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
38	chr12:21809000-21811200	Active TSS	Fetal Muscle Leg	muscle
39	chr12:21809000-21811200	Active TSS	Fetal Thymus	thymus
40	chr12:21809000-21811600	Active TSS	HUES6 Cell Line	embryonic stem cell
41	chr12:21809000-21811600	Active TSS	Brain Inferior Temporal Lobe	brain
42	chr12:21809000-21811800	Active TSS	NHLF	lung
43	chr12:21809200-21810200	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
44	chr12:21809200-21810200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
45	chr12:21809200-21811200	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
46	chr12:21809200-21811200	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
47	chr12:21809200-21811200	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
48	chr12:21809200-21811200	Active TSS	Muscle Satellite Cultured Cells	--
49	chr12:21809200-21811200	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
50	chr12:21809200-21811200	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin

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