Variant report

Variant	rs2617117
Chromosome Location	chrX:71809109-71809110
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 167 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:167)

rs_ID	r²[population]
rs1012354	1.00[EUR][1000 genomes]
rs1030452	1.00[EUR][1000 genomes]
rs1030453	1.00[EUR][1000 genomes]
rs1072992	1.00[EUR][1000 genomes]
rs1072993	1.00[EUR][1000 genomes]
rs10841863	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10841864	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10841865	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10841866	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11829561	1.00[EUR][1000 genomes]
rs11835091	1.00[EUR][1000 genomes]
rs1427830	1.00[EUR][1000 genomes]
rs1478293	1.00[EUR][1000 genomes]
rs1540405	1.00[EUR][1000 genomes]
rs1614040	1.00[EUR][1000 genomes]
rs1616390	1.00[EUR][1000 genomes]
rs1624003	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1626167	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1626303	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1629683	1.00[EUR][1000 genomes]
rs1630514	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1650271	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1650272	1.00[EUR][1000 genomes]
rs1650277	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1650278	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1650279	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1650280	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1650282	1.00[EUR][1000 genomes]
rs1650284	0.88[AFR][1000 genomes]
rs1650285	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1650286	1.00[EUR][1000 genomes]
rs1650287	1.00[EUR][1000 genomes]
rs1650288	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1650289	1.00[EUR][1000 genomes]
rs1650290	1.00[EUR][1000 genomes]
rs1650291	1.00[EUR][1000 genomes]
rs1650292	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1650293	1.00[EUR][1000 genomes]
rs1650294	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1650295	1.00[EUR][1000 genomes]
rs1650297	1.00[EUR][1000 genomes]
rs1650300	1.00[EUR][1000 genomes]
rs1650301	1.00[EUR][1000 genomes]
rs1650305	1.00[EUR][1000 genomes]
rs1650306	1.00[EUR][1000 genomes]
rs1650310	1.00[EUR][1000 genomes]
rs1650312	1.00[EUR][1000 genomes]
rs1650314	1.00[EUR][1000 genomes]
rs1650315	1.00[EUR][1000 genomes]
rs1650318	1.00[EUR][1000 genomes]
rs1677073	1.00[EUR][1000 genomes]
rs1677074	1.00[EUR][1000 genomes]
rs1677078	1.00[EUR][1000 genomes]
rs1677079	1.00[EUR][1000 genomes]
rs1677085	1.00[EUR][1000 genomes]
rs1677088	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1677090	1.00[EUR][1000 genomes]
rs1677092	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1677093	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1677094	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1677095	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1677096	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1677097	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1677098	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1677100	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1677104	1.00[EUR][1000 genomes]
rs1677105	1.00[EUR][1000 genomes]
rs1677106	1.00[EUR][1000 genomes]
rs1677107	1.00[EUR][1000 genomes]
rs1677109	1.00[EUR][1000 genomes]
rs1677110	1.00[EUR][1000 genomes]
rs1677111	1.00[EUR][1000 genomes]
rs1677113	1.00[EUR][1000 genomes]
rs1677118	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1677124	1.00[EUR][1000 genomes]
rs1677125	1.00[EUR][1000 genomes]
rs1677126	1.00[EUR][1000 genomes]
rs1677127	1.00[EUR][1000 genomes]
rs1677128	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1677131	1.00[EUR][1000 genomes]
rs1677132	1.00[EUR][1000 genomes]
rs1677133	1.00[EUR][1000 genomes]
rs1677135	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1677136	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1677138	1.00[EUR][1000 genomes]
rs1677139	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1677141	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1813751	1.00[EUR][1000 genomes]
rs2077044	1.00[EUR][1000 genomes]
rs2217238	1.00[EUR][1000 genomes]
rs255445	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs255449	1.00[EUR][1000 genomes]
rs255452	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2559823	0.85[AFR][1000 genomes]
rs2617118	0.88[AFR][1000 genomes]
rs4237915	1.00[EUR][1000 genomes]
rs4438091	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4762714	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4762716	1.00[EUR][1000 genomes]
rs4762856	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4762858	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4762859	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4762862	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56013787	1.00[EUR][1000 genomes]
rs56035640	1.00[EUR][1000 genomes]
rs56066637	1.00[EUR][1000 genomes]
rs56160727	1.00[EUR][1000 genomes]
rs56271252	1.00[EUR][1000 genomes]
rs56729740	1.00[EUR][1000 genomes]
rs56871137	1.00[EUR][1000 genomes]
rs56994698	1.00[EUR][1000 genomes]
rs57115374	1.00[EUR][1000 genomes]
rs57200111	1.00[EUR][1000 genomes]
rs57338327	1.00[EUR][1000 genomes]
rs57842305	1.00[EUR][1000 genomes]
rs58465040	1.00[EUR][1000 genomes]
rs58527132	1.00[EUR][1000 genomes]
rs59247664	1.00[EUR][1000 genomes]
rs59468844	1.00[EUR][1000 genomes]
rs59541120	1.00[EUR][1000 genomes]
rs60486179	1.00[EUR][1000 genomes]
rs60632805	1.00[EUR][1000 genomes]
rs60652753	1.00[EUR][1000 genomes]
rs61187969	1.00[EUR][1000 genomes]
rs61410104	0.87[AFR][1000 genomes]
rs61482461	1.00[EUR][1000 genomes]
rs7135799	1.00[EUR][1000 genomes]
rs7137128	0.81[AFR][1000 genomes]
rs7299671	0.81[AFR][1000 genomes]
rs7299674	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7299680	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7300051	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73249228	1.00[EUR][1000 genomes]
rs73249231	1.00[EUR][1000 genomes]
rs73249234	1.00[EUR][1000 genomes]
rs73249241	1.00[EUR][1000 genomes]
rs73249265	1.00[EUR][1000 genomes]
rs73249266	1.00[EUR][1000 genomes]
rs73249268	1.00[EUR][1000 genomes]
rs73249276	1.00[EUR][1000 genomes]
rs73249282	1.00[EUR][1000 genomes]
rs73262386	1.00[EUR][1000 genomes]
rs736047	1.00[EUR][1000 genomes]
rs74066770	1.00[EUR][1000 genomes]
rs74067628	1.00[EUR][1000 genomes]
rs74069327	1.00[EUR][1000 genomes]
rs74069332	1.00[EUR][1000 genomes]
rs74069333	1.00[EUR][1000 genomes]
rs74069343	1.00[EUR][1000 genomes]
rs74069345	1.00[EUR][1000 genomes]
rs74069349	1.00[EUR][1000 genomes]
rs74069350	1.00[EUR][1000 genomes]
rs74069351	1.00[EUR][1000 genomes]
rs74069352	1.00[EUR][1000 genomes]
rs74069353	1.00[EUR][1000 genomes]
rs74069354	1.00[EUR][1000 genomes]
rs74069355	1.00[EUR][1000 genomes]
rs74069356	1.00[EUR][1000 genomes]
rs74069357	1.00[EUR][1000 genomes]
rs74069362	1.00[EUR][1000 genomes]
rs74069363	1.00[EUR][1000 genomes]
rs759931	1.00[EUR][1000 genomes]
rs759932	1.00[EUR][1000 genomes]
rs759933	1.00[EUR][1000 genomes]
rs759934	1.00[EUR][1000 genomes]
rs7974267	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs962947	1.00[EUR][1000 genomes]

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:71793000-71810200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chrX:71793000-71882000	Weak transcription	Left Ventricle	heart
3	chrX:71793200-71840800	Weak transcription	Aorta	Aorta
4	chrX:71793400-71933000	Weak transcription	Duodenum Smooth Muscle	Duodenum
5	chrX:71793800-71836600	Weak transcription	A549	lung
6	chrX:71796800-71812200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
7	chrX:71797000-71823200	Weak transcription	Muscle Satellite Cultured Cells	--
8	chrX:71797000-71828000	Weak transcription	Skeletal Muscle Male	skeletal muscle
9	chrX:71797200-71881600	Weak transcription	Psoas Muscle	Psoas
10	chrX:71797400-71828000	Weak transcription	Hela-S3	cervix
11	chrX:71798200-71825400	Weak transcription	Esophagus	oesophagus
12	chrX:71804200-71827800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chrX:71805800-71830600	Weak transcription	Gastric	stomach
14	chrX:71806000-71828000	Weak transcription	HUES6 Cell Line	embryonic stem cell
15	chrX:71806200-71812200	Weak transcription	Skeletal Muscle Female	skeletal muscle
16	chrX:71806200-71817000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chrX:71806200-71826200	Weak transcription	Ovary	ovary
18	chrX:71806200-71827600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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