Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs12486875	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12487360	0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12491538	0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12491708	0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12497150	1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs12497945	0.87[EUR][1000 genomes]
rs16826990	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16826999	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16827087	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs1871969	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28436625	0.96[ASN][1000 genomes]
rs56691909	1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs57202263	0.85[ASN][1000 genomes]
rs58069857	0.98[ASN][1000 genomes]
rs58557481	0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs60275122	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60826377	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73873777	1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs9823211	0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9846561	0.98[ASN][1000 genomes]
rs9990369	0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3349885	chr3:156685409-156878910	Flanking Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	141 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:156744200-156747600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr3:156744400-156748000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr3:156744400-156748000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr3:156744600-156748000	Weak transcription	NHEK	skin
5	chr3:156745400-156746000	Enhancers	HUVEC	blood vessel
6	chr3:156745600-156746200	Bivalent Enhancer	Primary T helper memory cells from peripheral blood 1	blood
7	chr3:156745800-156746000	Enhancers	Primary T helper cells PMA-I stimulated	--

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