Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs12486875	0.98[ASN][1000 genomes]
rs12487360	0.94[ASN][1000 genomes]
rs12491538	0.94[ASN][1000 genomes]
rs12491708	0.94[ASN][1000 genomes]
rs12497150	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16826990	0.94[ASN][1000 genomes]
rs16826999	0.94[ASN][1000 genomes]
rs16827068	0.98[ASN][1000 genomes]
rs16827087	0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1871969	0.94[ASN][1000 genomes]
rs28436625	0.94[ASN][1000 genomes]
rs56691909	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57202263	0.83[ASN][1000 genomes]
rs58557481	1.00[ASN][1000 genomes]
rs60275122	0.98[ASN][1000 genomes]
rs60826377	0.98[ASN][1000 genomes]
rs73873777	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9823211	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9846561	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9990369	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3349885	chr3:156685409-156878910	Flanking Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	141 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:156751400-156761200	Weak transcription	Colon Smooth Muscle	Colon
2	chr3:156756600-156757000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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