Variant report
| Variant | rs73873777 |
|---|---|
| Chromosome Location | chr3:156758369-156758370 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr3:156757551..156759923-chr3:156761629..156763483,3 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:22)
| rs_ID | r2[population] |
|---|---|
| rs12486875 | 0.98[ASN][1000 genomes] |
| rs12487360 | 0.94[ASN][1000 genomes] |
| rs12491538 | 0.94[ASN][1000 genomes] |
| rs12491708 | 0.94[ASN][1000 genomes] |
| rs12497150 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs16826990 | 1.00[AMR][1000 genomes];0.94[ASN][1000 genomes] |
| rs16826999 | 1.00[AMR][1000 genomes];0.94[ASN][1000 genomes] |
| rs16827068 | 1.00[AMR][1000 genomes];0.98[ASN][1000 genomes] |
| rs16827087 | 0.87[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs1871969 | 1.00[AMR][1000 genomes];0.94[ASN][1000 genomes] |
| rs28436625 | 0.94[ASN][1000 genomes] |
| rs56691909 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs57202263 | 0.83[ASN][1000 genomes] |
| rs57283824 | 0.93[AFR][1000 genomes] |
| rs58069857 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs58557481 | 1.00[ASN][1000 genomes] |
| rs60275122 | 1.00[AMR][1000 genomes];0.98[ASN][1000 genomes] |
| rs60826377 | 1.00[AMR][1000 genomes];0.98[ASN][1000 genomes] |
| rs73873782 | 0.93[AFR][1000 genomes] |
| rs9823211 | 1.00[ASN][1000 genomes] |
| rs9846561 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9990369 | 0.94[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv3349885 | chr3:156685409-156878910 | Flanking Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 141 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:156751400-156761200 | Weak transcription | Colon Smooth Muscle | Colon |
