Variant report

Variant	rs16827087
Chromosome Location	chr3:156749266-156749267
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs12486875	1.00[ASN][1000 genomes]
rs12487360	0.96[ASN][1000 genomes]
rs12491538	0.96[ASN][1000 genomes]
rs12491708	0.96[ASN][1000 genomes]
rs12497150	0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16826990	0.88[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs16826999	0.88[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs16827068	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs1871969	0.88[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs28436625	0.96[ASN][1000 genomes]
rs56691909	0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs57202263	0.85[ASN][1000 genomes]
rs58069857	0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs58557481	0.98[ASN][1000 genomes]
rs60275122	0.96[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs60826377	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73873777	0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9823211	0.98[ASN][1000 genomes]
rs9846561	0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9990369	0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3349885	chr3:156685409-156878910	Flanking Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	141 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:156746800-156749400	Enhancers	Primary B cells from cord blood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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