Variant report

Variant	rs16831786
Chromosome Location	chr2:190493642-190493643
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10197551	0.85[YRI][hapmap]
rs10197577	1.00[ASW][hapmap];0.84[YRI][hapmap]
rs10209952	0.83[AFR][1000 genomes]
rs10497706	0.85[YRI][hapmap]
rs11568345	0.83[MKK][hapmap]
rs12990184	1.00[MEX][hapmap]
rs13416709	0.89[YRI][hapmap]
rs13418043	0.89[YRI][hapmap]
rs13418158	1.00[ASW][hapmap];0.84[YRI][hapmap]
rs13429804	0.85[YRI][hapmap]
rs16823972	1.00[AMR][1000 genomes]
rs16831975	0.85[YRI][hapmap]
rs5742923	1.00[ASW][hapmap];0.85[YRI][hapmap]
rs5743009	0.85[YRI][hapmap]
rs5743019	1.00[AMR][1000 genomes]
rs6746951	0.83[YRI][hapmap]
rs7600993	1.00[ASW][hapmap];0.85[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533029	chr2:189812229-190554339	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	40 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:190479000-190503800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr2:190484400-190493800	Weak transcription	A549	lung
3	chr2:190484600-190494400	Weak transcription	HUVEC	blood vessel
4	chr2:190486200-190494400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr2:190487400-190494000	Weak transcription	Stomach Mucosa	stomach
6	chr2:190488200-190494000	Weak transcription	Ovary	ovary
7	chr2:190489600-190494200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr2:190489600-190494200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
9	chr2:190489800-190494200	Weak transcription	HUES6 Cell Line	embryonic stem cell
10	chr2:190490200-190494000	Weak transcription	Hela-S3	cervix
11	chr2:190490800-190493800	Weak transcription	K562	blood
12	chr2:190491000-190493800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
13	chr2:190493600-190494200	Enhancers	Fetal Kidney	kidney
14	chr2:190493600-190494200	Enhancers	Fetal Lung	lung
15	chr2:190493600-190494800	Enhancers	ES-I3 Cell Line	embryonic stem cell
16	chr2:190493600-190495800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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