Variant report

Variant	rs16840594
Chromosome Location	chr3:133407599-133407600
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10512904	0.90[CEU][hapmap]
rs10512907	0.89[CEU][hapmap]
rs10512908	0.90[CEU][hapmap]
rs10512909	0.84[CEU][hapmap]
rs11706413	0.90[CEU][hapmap]
rs11706586	0.90[CEU][hapmap];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11707750	0.90[CEU][hapmap]
rs11708197	0.90[CEU][hapmap]
rs11709132	0.89[CEU][hapmap];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11709349	0.90[CEU][hapmap]
rs11709404	0.90[CEU][hapmap]
rs11709461	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs11709940	0.88[CEU][hapmap]
rs11710111	0.84[CEU][hapmap]
rs11711706	0.88[CEU][hapmap]
rs11712672	0.89[CEU][hapmap]
rs11713248	0.89[CEU][hapmap];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11714392	0.90[CEU][hapmap];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11714422	0.90[CEU][hapmap]
rs11715615	0.90[CEU][hapmap]
rs11716388	0.89[CEU][hapmap]
rs11717902	0.89[CEU][hapmap];0.85[EUR][1000 genomes]
rs11718050	0.90[CEU][hapmap];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs16840595	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17301253	0.90[CEU][hapmap]
rs17301766	0.84[CEU][hapmap]
rs17301889	0.90[CEU][hapmap]
rs17373504	0.90[CEU][hapmap]
rs2718801	0.82[CEU][hapmap]
rs28846461	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62282454	0.80[EUR][1000 genomes]
rs62282456	0.98[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6765265	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7349558	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7630957	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7650725	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7653808	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv516081	chr3:133399702-133412094	Weak transcription Enhancers ZNF genes & repeats	TF binding region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:133407200-133409600	Weak transcription	Left Ventricle	heart
2	chr3:133407200-133410200	Weak transcription	HepG2	liver

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links