Variant report

Variant	rs11718050
Chromosome Location	chr3:133393323-133393324
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:133380517..133382268-chr3:133392031..133394854,2	MCF-7	breast:
2	chr3:133391131..133393596-chr3:133524398..133526804,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000163781	Chromatin interaction
ENSG00000242337	Chromatin interaction
ENSG00000144867	Chromatin interaction

Extended variants
information (count: 81 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:81)

rs_ID	r²[population]
rs10512903	0.80[CEU][hapmap];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10512904	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10512907	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10512908	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10512909	0.95[CEU][hapmap];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11706413	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11706586	1.00[CEU][hapmap];0.93[YRI][hapmap];0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11706809	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11707750	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11708197	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11708532	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11708565	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11709132	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11709349	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11709404	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11709461	0.90[CEU][hapmap];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11709940	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11710111	0.95[CEU][hapmap];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11710717	1.00[ASN][1000 genomes]
rs11711706	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11712186	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11712672	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11713205	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11713248	1.00[CEU][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11714392	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11714422	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11715407	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11715435	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11715615	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11716197	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11716388	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11716415	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11717424	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11717902	1.00[CEU][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11718234	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11718255	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11719366	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11719585	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11719687	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11720825	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs16840594	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs16840595	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17301253	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17301521	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17301766	0.95[CEU][hapmap];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17301889	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17373504	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17373726	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2718801	0.94[CEU][hapmap];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs28846461	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs55729127	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55741097	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56040719	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs56292037	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56323915	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62282388	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62282389	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62282390	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62282392	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62282415	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62282417	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62282418	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62282419	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62282420	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62282421	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62282424	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62282425	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62282427	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62282428	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62282429	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62282431	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62282451	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62282452	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62282453	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62282454	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62282456	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6765265	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7349558	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7630957	0.85[CEU][hapmap];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7650725	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7653808	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]

No data

Chromatin state (count:82 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:133389400-133394600	Enhancers	HepG2	liver
2	chr3:133392400-133393800	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
3	chr3:133392800-133393600	Flanking Active TSS	Liver	Liver
4	chr3:133392800-133393600	Active TSS	Brain Angular Gyrus	brain
5	chr3:133392800-133393800	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
6	chr3:133392800-133393800	Bivalent/Poised TSS	ES-WA7 Cell Line	embryonic stem cell
7	chr3:133392800-133393800	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
8	chr3:133392800-133393800	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
9	chr3:133392800-133393800	Flanking Bivalent TSS/Enh	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr3:133392800-133393800	Bivalent/Poised TSS	Brain Dorsolateral Prefrontal Cortex	brain
11	chr3:133392800-133394000	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
12	chr3:133392800-133394000	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
13	chr3:133393000-133393400	Bivalent/Poised TSS	Primary hematopoietic stem cells	blood
14	chr3:133393000-133393400	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr3:133393000-133393400	Active TSS	Brain Cingulate Gyrus	brain
16	chr3:133393000-133393400	Active TSS	Brain Inferior Temporal Lobe	brain
17	chr3:133393000-133393400	Bivalent/Poised TSS	HSMM	muscle
18	chr3:133393000-133393600	Bivalent Enhancer	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr3:133393000-133393600	Bivalent/Poised TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr3:133393000-133393600	Bivalent Enhancer	Primary hematopoietic stem cells short term culture	blood
21	chr3:133393000-133393600	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr3:133393000-133393600	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr3:133393000-133393600	Bivalent Enhancer	Fetal Brain Male	brain
24	chr3:133393000-133393600	Bivalent Enhancer	Fetal Lung	lung
25	chr3:133393000-133393800	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
26	chr3:133393000-133393800	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
27	chr3:133393000-133393800	Bivalent/Poised TSS	ES-UCSF4 Cell Line	embryonic stem cell
28	chr3:133393000-133393800	Bivalent/Poised TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr3:133393000-133393800	Bivalent Enhancer	Primary B cells from peripheral blood	blood
30	chr3:133393000-133393800	Flanking Bivalent TSS/Enh	Brain Germinal Matrix	brain
31	chr3:133393000-133393800	Enhancers	Spleen	Spleen
32	chr3:133393000-133394000	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
33	chr3:133393200-133393400	Flanking Bivalent TSS/Enh	H1 Cell Line	embryonic stem cell
34	chr3:133393200-133393400	Bivalent/Poised TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
35	chr3:133393200-133393400	Bivalent Enhancer	Breast Myoepithelial Primary Cells	Breast
36	chr3:133393200-133393400	Bivalent Enhancer	Primary T helper cells fromperipheralblood	blood
37	chr3:133393200-133393400	Bivalent Enhancer	Primary T regulatory cells fromperipheralblood	blood
38	chr3:133393200-133393400	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
39	chr3:133393200-133393400	Bivalent Enhancer	Primary T killer naive cells fromperipheralblood	blood
40	chr3:133393200-133393400	Flanking Bivalent TSS/Enh	Foreskin Melanocyte Primary Cells skin01	Skin
41	chr3:133393200-133393400	Bivalent Enhancer	Primary mononuclear cells fromperipheralblood	Blood
42	chr3:133393200-133393400	Flanking Bivalent TSS/Enh	Fetal Brain Female	brain
43	chr3:133393200-133393400	Flanking Bivalent TSS/Enh	Fetal Intestine Large	intestine
44	chr3:133393200-133393400	Flanking Bivalent TSS/Enh	Fetal Muscle Trunk	muscle
45	chr3:133393200-133393400	Bivalent Enhancer	Placenta	Placenta
46	chr3:133393200-133393400	Flanking Bivalent TSS/Enh	Fetal Stomach	stomach
47	chr3:133393200-133393400	Bivalent Enhancer	Fetal Thymus	thymus
48	chr3:133393200-133393400	Flanking Bivalent TSS/Enh	Left Ventricle	heart
49	chr3:133393200-133393400	Flanking Bivalent TSS/Enh	Skeletal Muscle Female	skeletal muscle
50	chr3:133393200-133393400	Flanking Bivalent TSS/Enh	Thymus	Thymus

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