Variant report

Variant	rs16840595
Chromosome Location	chr3:133409004-133409005
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10512904	0.90[CEU][hapmap]
rs10512907	0.89[CEU][hapmap]
rs10512908	0.90[CEU][hapmap]
rs10512909	0.84[CEU][hapmap]
rs11706413	0.90[CEU][hapmap]
rs11706586	0.90[CEU][hapmap];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11707750	0.90[CEU][hapmap]
rs11708197	0.90[CEU][hapmap]
rs11708532	0.81[EUR][1000 genomes]
rs11708565	0.81[EUR][1000 genomes]
rs11709132	0.89[CEU][hapmap];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11709349	0.90[CEU][hapmap]
rs11709404	0.90[CEU][hapmap]
rs11709461	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs11709940	0.88[CEU][hapmap]
rs11710111	0.84[CEU][hapmap]
rs11711706	0.88[CEU][hapmap]
rs11712672	0.89[CEU][hapmap]
rs11713248	0.89[CEU][hapmap];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11714392	0.90[CEU][hapmap];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11714422	0.90[CEU][hapmap]
rs11715615	0.90[CEU][hapmap]
rs11716388	0.89[CEU][hapmap]
rs11717902	0.89[CEU][hapmap];0.88[EUR][1000 genomes]
rs11718050	0.90[CEU][hapmap];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11719687	0.81[EUR][1000 genomes]
rs16840594	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17301253	0.90[CEU][hapmap]
rs17301766	0.84[CEU][hapmap]
rs17301889	0.90[CEU][hapmap]
rs17373504	0.90[CEU][hapmap]
rs2718801	0.82[CEU][hapmap]
rs28846461	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56323915	0.81[EUR][1000 genomes]
rs62282427	0.81[EUR][1000 genomes]
rs62282428	0.80[EUR][1000 genomes]
rs62282429	0.81[EUR][1000 genomes]
rs62282431	0.81[EUR][1000 genomes]
rs62282451	0.81[EUR][1000 genomes]
rs62282452	0.81[EUR][1000 genomes]
rs62282453	0.82[EUR][1000 genomes]
rs62282454	0.83[EUR][1000 genomes]
rs62282456	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6765265	0.99[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7349558	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7630957	1.00[CEU][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7650725	0.99[AFR][1000 genomes];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7653808	0.99[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv516081	chr3:133399702-133412094	Weak transcription Enhancers ZNF genes & repeats	TF binding region	1 gene(s)	inside rSNPs	diseases
2	nsv979783	chr3:133408825-133413260	Weak transcription Active TSS Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:133407200-133409600	Weak transcription	Left Ventricle	heart
2	chr3:133407200-133410200	Weak transcription	HepG2	liver

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