Variant report

Variant	rs11708565
Chromosome Location	chr3:133379708-133379709
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	BACH1	chr3:133379647-133379954	K562	blood:	n/a	n/a
2	E2F4	chr3:133379686-133381461	MCF10A-Er-Src	breast:	n/a	chr3:133380784-133380792 chr3:133380785-133380796 chr3:133380785-133380796 chr3:133380785-133380792 chr3:133380785-133380792 chr3:133380683-133380693 chr3:133380783-133380794 chr3:133380785-133380792
3	MXI1	chr3:133379290-133381643	SK-N-SH	brain:	n/a	n/a
4	YY1	chr3:133379529-133379735	GM12892	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr3:133378019..133382399-chr3:133522860..133528810,6	K562	blood:
2	chr3:133373411..133375174-chr3:133378330..133380053,2	K562	blood:
3	chr3:133333661..133336033-chr3:133377209..133379803,2	K562	blood:
4	chr3:133375493..133377434-chr3:133377728..133380427,4	K562	blood:
5	chr3:133371314..133375654-chr3:133378564..133381849,6	K562	blood:
6	chr3:133379614..133382648-chr3:133523517..133526970,4	MCF-7	breast:
7	chr3:133378243..133380409-chr3:133529566..133531279,2	MCF-7	breast:
8	chr3:133292114..133294655-chr3:133378270..133380553,3	K562	blood:
9	chr3:133374912..133377513-chr3:133379480..133381997,2	MCF-7	breast:

Variant related genes	Relation type
TFP1	TF binding region
TOPBP1	TF binding region
RNU6-678P	TF binding region
ENSG00000163781	Chromatin interaction
ENSG00000091527	Chromatin interaction
ENSG00000144867	Chromatin interaction

Extended variants
information (count: 80 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:80)

rs_ID	r²[population]
rs10512903	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10512904	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10512907	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10512908	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10512909	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11706413	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11706586	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11706809	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11707750	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11708197	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11708532	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11709132	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11709349	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11709404	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11709461	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11709940	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11710111	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11710717	1.00[ASN][1000 genomes]
rs11711706	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11712186	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11712672	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11713205	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11713248	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11714392	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11714422	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11715407	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11715435	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11715615	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11716197	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11716388	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11716415	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11717424	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11717902	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11718050	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11718234	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11718255	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11719366	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11719585	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11719687	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11720825	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs16840595	0.81[EUR][1000 genomes]
rs17301253	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17301521	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17301766	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17301889	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17373504	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17373726	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2718801	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs28846461	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs55729127	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55741097	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56040719	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs56292037	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56323915	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62282385	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs62282388	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62282389	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62282390	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62282392	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62282415	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62282417	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62282418	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62282419	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62282420	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62282421	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62282424	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62282425	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62282427	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62282428	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62282429	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62282431	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62282451	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62282452	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62282453	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62282454	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62282456	0.84[EUR][1000 genomes]
rs7349558	0.89[EUR][1000 genomes]
rs7630957	0.82[EUR][1000 genomes]
rs7650725	0.84[EUR][1000 genomes]
rs7653808	0.84[EUR][1000 genomes]

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:133337400-133380000	Weak transcription	Pancreas	Pancrea
2	chr3:133340200-133380000	Weak transcription	Right Ventricle	heart
3	chr3:133345600-133380000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr3:133345600-133380000	Weak transcription	Psoas Muscle	Psoas
5	chr3:133352600-133380000	Weak transcription	Esophagus	oesophagus
6	chr3:133352600-133380000	Weak transcription	Gastric	stomach
7	chr3:133352600-133380000	Weak transcription	Spleen	Spleen
8	chr3:133353000-133379800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr3:133359600-133380000	Weak transcription	Aorta	Aorta
10	chr3:133363000-133380000	Weak transcription	Small Intestine	intestine
11	chr3:133364000-133379800	Weak transcription	Brain Angular Gyrus	brain
12	chr3:133365600-133380200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr3:133371400-133380000	Weak transcription	Colonic Mucosa	Colon
14	chr3:133371400-133380000	Weak transcription	Lung	lung
15	chr3:133371400-133380000	Weak transcription	Ovary	ovary
16	chr3:133375200-133380000	Weak transcription	Brain Cingulate Gyrus	brain
17	chr3:133375200-133380000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
18	chr3:133375800-133379800	Weak transcription	HSMMtube	muscle
19	chr3:133375800-133380000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
20	chr3:133375800-133380000	Weak transcription	H9 Cell Line	embryonic stem cell
21	chr3:133375800-133380000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
22	chr3:133376800-133379800	Weak transcription	Skeletal Muscle Female	skeletal muscle
23	chr3:133376800-133380000	Weak transcription	Skeletal Muscle Male	skeletal muscle
24	chr3:133377000-133379800	Weak transcription	Fetal Kidney	kidney
25	chr3:133377600-133380000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr3:133377800-133379800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr3:133377800-133380000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
28	chr3:133377800-133380000	Weak transcription	Adipose Nuclei	Adipose
29	chr3:133378000-133379800	Transcr. at gene 5' and 3'	Dnd41	blood
30	chr3:133378000-133380000	Weak transcription	Brain Inferior Temporal Lobe	brain
31	chr3:133378000-133380000	Weak transcription	Placenta	Placenta
32	chr3:133378000-133380000	Weak transcription	Placenta Amnion	Placenta Amnion
33	chr3:133378200-133380000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
34	chr3:133378200-133380000	Weak transcription	Fetal Muscle Trunk	muscle
35	chr3:133378200-133380000	Weak transcription	Left Ventricle	heart
36	chr3:133378200-133381400	Active TSS	GM12878-XiMat	blood
37	chr3:133378400-133379800	Weak transcription	Brain Anterior Caudate	brain
38	chr3:133378600-133379800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
39	chr3:133378800-133379800	Enhancers	Primary T helper naive cells from peripheral blood	blood
40	chr3:133378800-133379800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
41	chr3:133378800-133379800	Enhancers	Primary T helper cells PMA-I stimulated	--
42	chr3:133378800-133379800	Enhancers	Primary T helper cells fromperipheralblood	blood
43	chr3:133378800-133379800	Flanking Active TSS	Hela-S3	cervix
44	chr3:133378800-133380000	Enhancers	Primary neutrophils fromperipheralblood	blood
45	chr3:133378800-133380000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
46	chr3:133378800-133380000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
47	chr3:133378800-133380000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
48	chr3:133378800-133380000	Enhancers	Primary T killer memory cells from peripheral blood	blood
49	chr3:133378800-133380000	Enhancers	Stomach Mucosa	stomach
50	chr3:133378800-133380200	Enhancers	Sigmoid Colon	Sigmoid Colon

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