Variant report

Variant	rs62282390
Chromosome Location	chr3:133319402-133319403
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 74 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:74)

rs_ID	r²[population]
rs10512903	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10512904	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10512907	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10512908	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10512909	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11706413	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11706586	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11706809	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11707750	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11708197	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11708532	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11708565	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11709132	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11709349	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11709404	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11709461	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11709940	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11710111	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11710717	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11711706	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11712186	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11712672	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11713205	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11713248	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11714392	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11714422	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11715407	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11715435	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11715615	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11716197	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11716388	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11716415	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11717424	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11717902	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11718050	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11718234	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11718255	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11719366	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11719585	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11719687	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11720825	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17301253	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17301521	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17301766	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17301889	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17373504	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17373726	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2718801	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs55729127	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55741097	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56040719	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56292037	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56323915	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62282385	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62282388	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62282389	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62282392	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62282415	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62282417	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62282418	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62282419	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62282420	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62282421	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62282424	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62282425	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62282427	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62282428	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62282429	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62282431	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62282451	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62282452	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62282453	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62282454	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7349558	0.82[EUR][1000 genomes]

No data

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:133305800-133330600	Weak transcription	Fetal Intestine Small	intestine
2	chr3:133306400-133342800	Weak transcription	Colonic Mucosa	Colon
3	chr3:133307000-133328400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr3:133307200-133319800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
5	chr3:133307200-133335800	Weak transcription	Pancreas	Pancrea
6	chr3:133307400-133326400	Weak transcription	Right Ventricle	heart
7	chr3:133307400-133331200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr3:133307400-133347200	Weak transcription	Brain Angular Gyrus	brain
9	chr3:133307800-133319600	Weak transcription	Hela-S3	cervix
10	chr3:133308000-133324400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr3:133308000-133335400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
12	chr3:133308200-133326400	Weak transcription	Fetal Brain Male	brain
13	chr3:133308200-133326400	Weak transcription	Fetal Kidney	kidney
14	chr3:133308200-133326400	Weak transcription	Ovary	ovary
15	chr3:133308200-133326600	Weak transcription	Brain Cingulate Gyrus	brain
16	chr3:133308200-133326600	Weak transcription	Skeletal Muscle Male	skeletal muscle
17	chr3:133308200-133327400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
18	chr3:133308200-133330600	Weak transcription	Gastric	stomach
19	chr3:133308200-133342200	Weak transcription	Brain Substantia Nigra	brain
20	chr3:133308200-133356000	Weak transcription	Colon Smooth Muscle	Colon
21	chr3:133308400-133319600	Weak transcription	Rectal Mucosa Donor 31	rectum
22	chr3:133308400-133320200	Weak transcription	Primary hematopoietic stem cells	blood
23	chr3:133308400-133327400	Weak transcription	H9 Cell Line	embryonic stem cell
24	chr3:133308600-133323400	Weak transcription	Fetal Brain Female	brain
25	chr3:133308600-133323800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
26	chr3:133308600-133324600	Weak transcription	HepG2	liver
27	chr3:133308600-133325000	Weak transcription	Liver	Liver
28	chr3:133308600-133326000	Weak transcription	Fetal Lung	lung
29	chr3:133308600-133326400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
30	chr3:133308600-133326400	Weak transcription	Skeletal Muscle Female	skeletal muscle
31	chr3:133308600-133326400	Weak transcription	Small Intestine	intestine
32	chr3:133308600-133327400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
33	chr3:133308600-133347600	Weak transcription	Placenta Amnion	Placenta Amnion
34	chr3:133308600-133349200	Weak transcription	Esophagus	oesophagus
35	chr3:133308600-133351600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
36	chr3:133308600-133352200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
37	chr3:133308800-133319600	Weak transcription	Duodenum Smooth Muscle	Duodenum
38	chr3:133308800-133320600	Weak transcription	Primary T cells from cord blood	blood
39	chr3:133308800-133323600	Weak transcription	Fetal Intestine Large	intestine
40	chr3:133308800-133323800	Weak transcription	Placenta	Placenta
41	chr3:133308800-133325800	Weak transcription	H1 Cell Line	embryonic stem cell
42	chr3:133308800-133325800	Weak transcription	Sigmoid Colon	Sigmoid Colon
43	chr3:133308800-133326000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
44	chr3:133308800-133326000	Weak transcription	Rectal Mucosa Donor 29	rectum
45	chr3:133308800-133326400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
46	chr3:133308800-133326400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
47	chr3:133308800-133326400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
48	chr3:133308800-133326400	Weak transcription	Brain Hippocampus Middle	brain
49	chr3:133308800-133326600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
50	chr3:133308800-133326600	Weak transcription	Brain Inferior Temporal Lobe	brain

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