Variant report

Variant	rs62282420
Chromosome Location	chr3:133356383-133356384
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:133355957..133358313-chr3:133361589..133363710,4	K562	blood:
2	chr3:133348823..133351307-chr3:133355431..133357068,2	K562	blood:
3	chr3:133355957..133358313-chr3:133361589..133363710,3	K562	blood:
4	chr3:133354937..133357561-chr3:133378982..133380932,3	MCF-7	breast:
5	chr3:133355745..133358606-chr3:133358791..133361375,3	K562	blood:
6	chr3:133356183..133358496-chr3:133362823..133365703,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000242337	Chromatin interaction
ENSG00000163781	Chromatin interaction

Extended variants
information (count: 79 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:79)

rs_ID	r²[population]
rs10512903	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10512904	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10512907	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10512908	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10512909	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11706413	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11706586	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11706809	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11707750	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11708197	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11708532	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11708565	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11709132	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11709349	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11709404	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11709461	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11709940	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11710111	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11710717	1.00[ASN][1000 genomes]
rs11711706	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11712186	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11712672	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11713205	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11713248	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11714392	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11714422	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11715407	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11715435	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11715615	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11716197	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11716388	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11716415	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11717424	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11717902	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11718050	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11718234	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11718255	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11719366	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11719585	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11719687	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11720825	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17301253	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17301521	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17301766	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17301889	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17373504	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17373726	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2718801	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs28846461	0.80[AMR][1000 genomes]
rs55729127	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55741097	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56040719	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs56292037	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56323915	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62282385	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs62282388	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62282389	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62282390	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62282392	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62282415	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62282417	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62282418	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62282419	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62282421	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62282424	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62282425	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62282427	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62282428	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62282429	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62282431	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62282451	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62282452	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62282453	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62282454	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62282456	0.82[EUR][1000 genomes]
rs7349558	0.87[EUR][1000 genomes]
rs7630957	0.80[EUR][1000 genomes]
rs7650725	0.82[EUR][1000 genomes]
rs7653808	0.82[EUR][1000 genomes]

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:133316600-133377600	Strong transcription	Dnd41	blood
2	chr3:133316600-133378000	Strong transcription	Primary neutrophils fromperipheralblood	blood
3	chr3:133317000-133378200	Strong transcription	Monocytes-CD14+_RO01746	blood
4	chr3:133317200-133378800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr3:133318400-133378600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
6	chr3:133319000-133363800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr3:133322200-133378200	Strong transcription	HUES64 Cell Line	embryonic stem cell
8	chr3:133322600-133378800	Weak transcription	Stomach Mucosa	stomach
9	chr3:133323200-133378200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr3:133323200-133378400	Strong transcription	Fetal Thymus	thymus
11	chr3:133323200-133378800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr3:133323400-133378200	Strong transcription	HUES48 Cell Line	embryonic stem cell
13	chr3:133323600-133377800	Strong transcription	Primary monocytes fromperipheralblood	blood
14	chr3:133323800-133378800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
15	chr3:133324200-133378200	Strong transcription	HUES6 Cell Line	embryonic stem cell
16	chr3:133327000-133362400	Weak transcription	Small Intestine	intestine
17	chr3:133328000-133356400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
18	chr3:133329200-133358400	Weak transcription	Fetal Heart	heart
19	chr3:133329400-133358200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr3:133332200-133378600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr3:133333400-133378000	Strong transcription	Primary T helper cells fromperipheralblood	blood
22	chr3:133334000-133359200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr3:133334200-133378400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
24	chr3:133334400-133368800	Strong transcription	Primary T cells fromperipheralblood	blood
25	chr3:133334600-133363200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr3:133334800-133367200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
27	chr3:133337400-133380000	Weak transcription	Pancreas	Pancrea
28	chr3:133338400-133359000	Strong transcription	Fetal Muscle Trunk	muscle
29	chr3:133338600-133368600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
30	chr3:133338800-133363400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
31	chr3:133339800-133378000	Strong transcription	Primary B cells from cord blood	blood
32	chr3:133340200-133380000	Weak transcription	Right Ventricle	heart
33	chr3:133341200-133378800	Strong transcription	Primary B cells from peripheral blood	blood
34	chr3:133342800-133361200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
35	chr3:133344800-133359000	Strong transcription	HSMM	muscle
36	chr3:133345000-133364400	Strong transcription	Cortex derived primary cultured neurospheres	brain
37	chr3:133345600-133380000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr3:133345600-133380000	Weak transcription	Psoas Muscle	Psoas
39	chr3:133346600-133368800	Strong transcription	GM12878-XiMat	blood
40	chr3:133347600-133361200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
41	chr3:133349200-133357400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
42	chr3:133349200-133364000	Strong transcription	Primary T cells from cord blood	blood
43	chr3:133349200-133364200	Strong transcription	Duodenum Mucosa	Duodenum
44	chr3:133349400-133364200	Strong transcription	H1 Cell Line	embryonic stem cell
45	chr3:133349400-133369000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
46	chr3:133349600-133378200	Strong transcription	iPS-18 Cell Line	embryonic stem cell
47	chr3:133349800-133364200	Strong transcription	Fetal Lung	lung
48	chr3:133350800-133365200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
49	chr3:133351000-133362000	Strong transcription	A549	lung
50	chr3:133351200-133359600	Strong transcription	HUVEC	blood vessel

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