Variant report

Variant	rs28846461
Chromosome Location	chr3:133405398-133405399
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10512907	0.80[AMR][1000 genomes]
rs10512908	0.80[AMR][1000 genomes]
rs10512909	0.80[AMR][1000 genomes]
rs11706586	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11708197	0.80[AMR][1000 genomes]
rs11708532	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11708565	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11709132	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11709461	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11712672	0.80[AMR][1000 genomes]
rs11713248	0.98[AFR][1000 genomes];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11714392	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11717902	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11718050	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11719687	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs16840594	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs16840595	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17301766	0.80[AMR][1000 genomes]
rs17301889	0.80[AMR][1000 genomes]
rs56323915	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs62282420	0.80[AMR][1000 genomes]
rs62282421	0.80[AMR][1000 genomes]
rs62282424	0.80[AMR][1000 genomes]
rs62282425	0.80[AMR][1000 genomes]
rs62282427	0.81[EUR][1000 genomes]
rs62282428	0.80[EUR][1000 genomes]
rs62282429	0.81[EUR][1000 genomes]
rs62282431	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs62282451	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs62282452	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs62282453	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs62282454	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62282456	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6765265	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7349558	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7630957	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7650725	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7653808	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv516081	chr3:133399702-133412094	Weak transcription Enhancers ZNF genes & repeats	TF binding region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:133393800-133406800	Weak transcription	Brain Substantia Nigra	brain

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