Variant report

Variant	rs62282417
Chromosome Location	chr3:133340970-133340971
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:133340863..133343125-chr3:133378672..133381992,3	K562	blood:
2	chr3:133337481..133339148-chr3:133339891..133342837,2	MCF-7	breast:
3	chr3:133291647..133294175-chr3:133339343..133341276,2	K562	blood:
4	chr3:133339967..133341714-chr3:133380275..133382295,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000091527	Chromatin interaction
ENSG00000242337	Chromatin interaction
ENSG00000163781	Chromatin interaction

Extended variants
information (count: 78 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:77)

rs_ID	r²[population]
rs10512903	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10512904	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10512907	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10512908	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10512909	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11706413	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11706586	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11706809	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11707750	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11708197	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11708532	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11708565	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11709132	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11709349	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11709404	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11709461	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11709940	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11710111	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11710717	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11711706	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11712186	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11712672	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11713205	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11713248	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11714392	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11714422	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11715407	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11715435	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11715615	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11716197	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11716388	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11716415	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11717424	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11717902	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11718050	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11718234	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11718255	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11719366	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11719585	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11719687	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11720825	0.80[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17301253	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17301521	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17301766	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17301889	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17373504	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17373726	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2718801	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs55729127	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55741097	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56040719	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs56292037	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56323915	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62282385	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs62282388	0.80[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62282389	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62282390	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62282392	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62282415	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62282418	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62282419	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62282420	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62282421	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62282424	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62282425	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62282427	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62282428	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62282429	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62282431	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62282451	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62282452	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62282453	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62282454	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62282456	0.81[EUR][1000 genomes]
rs7349558	0.86[EUR][1000 genomes]
rs7650725	0.81[EUR][1000 genomes]
rs7653808	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3406948	chr3:133340970-133341397	Weak transcription Strong transcription	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:133306400-133342800	Weak transcription	Colonic Mucosa	Colon
2	chr3:133307400-133347200	Weak transcription	Brain Angular Gyrus	brain
3	chr3:133308200-133342200	Weak transcription	Brain Substantia Nigra	brain
4	chr3:133308200-133356000	Weak transcription	Colon Smooth Muscle	Colon
5	chr3:133308600-133347600	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr3:133308600-133349200	Weak transcription	Esophagus	oesophagus
7	chr3:133308600-133351600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr3:133308600-133352200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr3:133310800-133349400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr3:133314800-133349200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr3:133314800-133351600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr3:133316600-133377600	Strong transcription	Dnd41	blood
13	chr3:133316600-133378000	Strong transcription	Primary neutrophils fromperipheralblood	blood
14	chr3:133317000-133378200	Strong transcription	Monocytes-CD14+_RO01746	blood
15	chr3:133317200-133378800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr3:133318400-133378600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
17	chr3:133319000-133363800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr3:133322200-133378200	Strong transcription	HUES64 Cell Line	embryonic stem cell
19	chr3:133322600-133378800	Weak transcription	Stomach Mucosa	stomach
20	chr3:133323200-133341000	Strong transcription	Cortex derived primary cultured neurospheres	brain
21	chr3:133323200-133378200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr3:133323200-133378400	Strong transcription	Fetal Thymus	thymus
23	chr3:133323200-133378800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr3:133323400-133378200	Strong transcription	HUES48 Cell Line	embryonic stem cell
25	chr3:133323600-133377800	Strong transcription	Primary monocytes fromperipheralblood	blood
26	chr3:133323800-133378800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
27	chr3:133324200-133378200	Strong transcription	HUES6 Cell Line	embryonic stem cell
28	chr3:133325000-133345000	Weak transcription	Psoas Muscle	Psoas
29	chr3:133325200-133352800	Strong transcription	Duodenum Smooth Muscle	Duodenum
30	chr3:133325200-133353000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
31	chr3:133325400-133348200	Strong transcription	iPS-18 Cell Line	embryonic stem cell
32	chr3:133326200-133347800	Strong transcription	Fetal Intestine Large	intestine
33	chr3:133327000-133362400	Weak transcription	Small Intestine	intestine
34	chr3:133327600-133351600	Weak transcription	Brain Cingulate Gyrus	brain
35	chr3:133328000-133356400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
36	chr3:133329200-133342800	Weak transcription	Fetal Brain Male	brain
37	chr3:133329200-133358400	Weak transcription	Fetal Heart	heart
38	chr3:133329400-133358200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
39	chr3:133331200-133352000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
40	chr3:133331400-133341600	Weak transcription	H9 Cell Line	embryonic stem cell
41	chr3:133331400-133341600	Weak transcription	Brain Hippocampus Middle	brain
42	chr3:133331400-133343600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr3:133331400-133347200	Weak transcription	Brain Anterior Caudate	brain
44	chr3:133331400-133349400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
45	chr3:133331400-133349400	Weak transcription	Gastric	stomach
46	chr3:133332200-133378600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
47	chr3:133333400-133378000	Strong transcription	Primary T helper cells fromperipheralblood	blood
48	chr3:133334000-133345200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
49	chr3:133334000-133359200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
50	chr3:133334200-133348400	Strong transcription	Primary T cells from cord blood	blood

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