Variant report

Variant	rs16845640
Chromosome Location	chr1:173222162-173222163
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1099449	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2022034	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2743808	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs844647	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs844650	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs844652	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs844653	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs844656	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs844658	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs844661	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs844662	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs844664	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:173218800-173224200	Weak transcription	Muscle Satellite Cultured Cells	--
2	chr1:173218800-173227600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr1:173219000-173224600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr1:173219000-173227000	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr1:173219000-173227400	Weak transcription	HMEC	breast
6	chr1:173219000-173229400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr1:173219200-173224600	Weak transcription	Hela-S3	cervix
8	chr1:173221600-173222600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr1:173221600-173223000	Enhancers	HSMM	muscle
10	chr1:173221800-173228400	Enhancers	HSMMtube	muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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