Variant report

Variant	rs844658
Chromosome Location	chr1:173236127-173236128
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1099449	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16845640	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2022034	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2743808	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs844647	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs844650	0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs844652	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs844653	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs844656	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs844661	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs844662	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs844664	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:173228200-173239400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr1:173233200-173236600	Weak transcription	GM12878-XiMat	blood
3	chr1:173235200-173240000	Enhancers	HSMM	muscle
4	chr1:173235400-173236200	Enhancers	HSMMtube	muscle
5	chr1:173235800-173240600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr1:173236000-173237600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr1:173236000-173239000	Enhancers	Hela-S3	cervix
8	chr1:173236000-173240000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr1:173236000-173240200	Enhancers	HMEC	breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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